Browse Element(s) Details


OsAffx.1353.1.S1_x_at

Description gb:NM_187814.1
DB_XREF= gi:34902713
GEN=P0710F09.21
TID=OsAffx.1353.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (P0710F09.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g505501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g453201/11transposon protein, putative, unclassified
LOC_Os09g305021/11transposon protein, putative, unclassified
LOC_Os04g058401/11hypothetical protein
LOC_Os04g086101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g427501/11transposon protein, putative, unclassified
LOC_Os06g449401/11transposon protein, putative, unclassified
LOC_Os09g295841/11wall-associated kinase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50510NANA1+29337801..29338121hypothetical protein
LOC_Os01g50520NANA1+29347691..29348184thromboxane-A synthase, putative
LOC_Os01g50530Os.52529.1.S1_x_at9/111+29351198..29352673Cytochrome P450 family protein
LOC_Os01g50539NANA1+29353527..29354800NA
LOC_Os01g50550OsAffx.1353.1.S1_x_at1/111+29358340..29360260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50560NANA1+29362120..29362350hypothetical protein
LOC_Os01g50570NANA1+29363218..29364118thromboxane-A synthase, putative
LOC_Os01g50580NANA1+29366846..29368211Cytochrome P450 family protein, expressed
LOC_Os01g50590NANA1+29371896..29374841Cytochrome P450 family protein
LOC_Os01g50600OsAffx.11548.1.S1_at11/111+29376328..29376881hypothetical protein
LOC_Os01g50610Os.30572.1.S1_at11/111+29377624..29380292SAM dependent carboxyl methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1353.1.S1_x_at--19--43716Chr10:9463870..9463891 (22 bp)
CCACCTGTCGGTGGCTCAAAGGAGG
NONE
OsAffx.1353.1.S1_x_at--1154--8293Chr02:15177239..15177263 (25 bp)
GGCTCAAAGGAGGTCGGCGCACGGT
NONE
OsAffx.1353.1.S1_x_at--231--7193Chr02:15177251..15177275 (25 bp)
GTCGGCGCACGGTGGACTCAGTCCA
NONE
OsAffx.1353.1.S1_x_at--296--7532Chr02:15177262..15177286 (25 bp)
GTGGACTCAGTCCACGCGCGCGCTG
NONE
OsAffx.1353.1.S1_x_at--984--8651Chr07:12876534..12876558 (25 bp)
TGGGCGCACCACGTGGTAGCCACGT
NONE
OsAffx.1353.1.S1_x_at--253--3351Chr07:12876525..12876549 (25 bp)
CACGTGGTAGCCACGTGGTGGCCAC
NONE
OsAffx.1353.1.S1_x_at--377--80189Chr12:21924695..21924826 (25 bp)
GGAGGACGAGGTGGCGCCGACGTGG
NONE
OsAffx.1353.1.S1_x_at--1000--6132Chr12:16923288..16923312 (25 bp)
GAGGGTCACGTGGACGGCCCAAATC
NONE
OsAffx.1353.1.S1_x_at--211--7691Chr07:12876431..12876455 (25 bp)
GGGTCACGTGGACGGCCCAAATCCA
NONE
OsAffx.1353.1.S1_x_at--406--7331Chr07:12876400..12876424 (25 bp)
GTGAATCGGGCGGTCACGGGCGAGC
NONE
OsAffx.1353.1.S1_x_at--882--4651Chr07:12876341..12876365 (25 bp)
GCGTGCGGCCCGATGGTCACCGACG
NONE
Target Sequence 
CCACCTGTCGGTGGCTCAAAGGAGGTCGGCGCACGGTGGACTCAGTCCACGCGCGCGCTGCCCGTGGGCGCACCACGTGG
TAGCCACGTGGTGGCCACGGCGGACGGGGAGGACGAGGTGGCGCCGACGTGGCGCCACAGGGGCAGCAACGCCGGGCGGC
ACGGGGAGGGTCACGTGGACGGCCCAAATCCACCCGGGGTGAATCGGGCGGTCACGGGCGAGCGGGAACCGGCCCACCGG
CCAGCCGGGGAGCGGTGGCGTGCGGCCCGATGGTCACCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1353.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis