Browse Element(s) Details


Os.52529.1.S1_x_at

Description gb:AK067688.1
DB_XREF= gi:32977706
TID=Os.52529.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013117E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117E18, full insert sequence.
FL= gb:AK067688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g505309/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50500OsAffx.22947.2.S1_x_at10/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.1.S1_x_at9/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.3.S1_x_at5/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.5.S1_x_at4/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.5.S1_at2/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50510NANA1+29337801..29338121hypothetical protein
LOC_Os01g50520NANA1+29347691..29348184thromboxane-A synthase, putative
LOC_Os01g50530Os.52529.1.S1_x_at9/111+29351198..29352673Cytochrome P450 family protein
LOC_Os01g50539NANA1+29353527..29354800NA
LOC_Os01g50550OsAffx.1353.1.S1_x_at1/111+29358340..29360260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50560NANA1+29362120..29362350hypothetical protein
LOC_Os01g50570NANA1+29363218..29364118thromboxane-A synthase, putative
LOC_Os01g50580NANA1+29366846..29368211Cytochrome P450 family protein, expressed
LOC_Os01g50590NANA1+29371896..29374841Cytochrome P450 family protein
LOC_Os01g50600OsAffx.11548.1.S1_at11/111+29376328..29376881hypothetical protein
LOC_Os01g50610Os.30572.1.S1_at11/111+29377624..29380292SAM dependent carboxyl methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0010223biological_processsecondary shoot formation
GO:0016117biological_processcarotenoid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52529.1.S1_x_at--1046--4291Chr01:29351916..29352015 (25 bp)
CCTACCTTGATCAGGTCCTGAAGGA
LOC_Os01g50530
Os.52529.1.S1_x_at--9--831Chr01:29352356..29352380 (25 bp)
ATGGCACCTGGTGTCCTAGGAAAGG
LOC_Os01g50530
Os.52529.1.S1_x_at--1086--191Chr01:29352390..29352414 (25 bp)
ATTTCCCAGAGCCAGAGGTGTTCCG
LOC_Os01g50530
Os.52529.1.S1_x_at--249--1451Chr01:29352447..29352471 (25 bp)
AGAAGAGGAGGCACCCGTACGCGCT
LOC_Os01g50530
Os.52529.1.S1_x_at--131--5611Chr01:29352532..29352556 (25 bp)
GAAATTGTCAGCGATCCACTTCTAC
LOC_Os01g50530
Os.52529.1.S1_x_at--337--8031Chr01:29352589..29352613 (25 bp)
GGAGTCTCCTCCTGAGTTTGTGTAC
LOC_Os01g50530
Os.52529.1.S1_x_at--46--1211Chr01:29352603..29352627 (25 bp)
AGTTTGTGTACTCGATCGTCTCCAA
LOC_Os01g50530
Os.52529.1.S1_x_at--1044--7151Chr01:29352620..29352644 (25 bp)
GTCTCCAATTTCAAGAACGGCGCCA
LOC_Os01g50530
Os.52529.1.S1_x_at--935--4551Chr01:29352639..29352663 (25 bp)
GCGCCAAGCTTCAGGTCATCAAGAG
LOC_Os01g50530
Os.52529.1.S1_x_at--902--6991Chr01:29352758..29352782 (25 bp)
GTACTGTACTTGTTTTCGCCGGGCA
NONE
Os.52529.1.S1_x_at--555--8271Chr01:29352779..29352803 (25 bp)
GGCAGTCCGTGTTGTACTCGTAATA
NONE
Target Sequence 
CCTACCTTGATCAGGTCCTGAAGGAAGCGATGAGATATTACCCCTCATCGCCATTGATAGCAAGGGAACTGAACCAACAG
CTCGAAATTGGAGGATATCCCCTTCCAAAGGGAACATGGGTGTGGATGGCACCTGGTGTCCTAGGAAAGGATCCCAAAAA
TTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGC
TCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCAC
TTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTT
CAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGA
TTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGT
TGTACTCGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52529.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis