Browse Element(s) Details


OsAffx.11548.1.S1_at

Description tigr:9629.m04897
TID=OsAffx.11548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5060011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50530Os.52529.1.S1_x_at9/111+29351198..29352673Cytochrome P450 family protein
LOC_Os01g50539NANA1+29353527..29354800NA
LOC_Os01g50550OsAffx.1353.1.S1_x_at1/111+29358340..29360260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50560NANA1+29362120..29362350hypothetical protein
LOC_Os01g50570NANA1+29363218..29364118thromboxane-A synthase, putative
LOC_Os01g50580NANA1+29366846..29368211Cytochrome P450 family protein, expressed
LOC_Os01g50590NANA1+29371896..29374841Cytochrome P450 family protein
LOC_Os01g50600OsAffx.11548.1.S1_at11/111+29376328..29376881hypothetical protein
LOC_Os01g50610Os.30572.1.S1_at11/111+29377624..29380292SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os01g50616Os.26967.1.S2_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50616Os.26967.1.S1_a_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50622Os.15428.1.S1_at10/111+29399634..29403172wound-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11548.1.S1_at--460--2631Chr01:29376408..29376430 (23 bp)
AACCTCCCACGTAGGGCTCGTCGTG
LOC_Os01g50600
OsAffx.11548.1.S1_at--493--1891Chr01:29376416..29376661 (25 bp)
ACGTAGGGCTCGTCGTGAAACCAGC
LOC_Os01g50600
OsAffx.11548.1.S1_at--851--8951Chr01:29376652..29376676 (25 bp)
TGAAACCAGCCCTCAATACTGCTAT
LOC_Os01g50600
OsAffx.11548.1.S1_at--997--1711Chr01:29376656..29376680 (25 bp)
ACCAGCCCTCAATACTGCTATAGGA
LOC_Os01g50600
OsAffx.11548.1.S1_at--88--9072Chr06:8820565..8820703 (25 bp)
TGCTATAGGACCTAATTTAACCCGG
NONE
OsAffx.11548.1.S1_at--823--10491Chr01:29376712..29376736 (25 bp)
TTAAGATTTCCAACTCAACAAAAAG
LOC_Os01g50600
OsAffx.11548.1.S1_at--706--831Chr01:29376749..29376773 (25 bp)
ATGGACTTATTCCTTAATGGGCCTC
LOC_Os01g50600
OsAffx.11548.1.S1_at--667--10411Chr01:29376755..29376779 (25 bp)
TTATTCCTTAATGGGCCTCACATAC
LOC_Os01g50600
OsAffx.11548.1.S1_at--766--791Chr01:29376765..29376789 (25 bp)
ATGGGCCTCACATACAAAAACAAAG
LOC_Os01g50600
OsAffx.11548.1.S1_at--1085--2411Chr01:29376783..29376807 (25 bp)
AACAAAGGGTTTGTTCAGTTCATTG
LOC_Os01g50600
OsAffx.11548.1.S1_at--264--8972Chr01:29376806..29376830 (25 bp)
TGCAAAAAAGACCTTACCATTTGTT
LOC_Os01g50600
Target Sequence 
AACCTCCCACGTAGGGCTCGTCGTGAAACCAGCCCTCAATACTGCTATAGGACCTAATTTAACCCGGTTTTGTAAGTTAG
GGGTTAAGATTTCCAACTCAACAAAAAGTGAGGGATATAAATGGACTTATTCCTTAATGGGCCTCACATACAAAAACAAA
GGGTTTGTTCAGTTCATTGCAAAAAAGACCTTACCATTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis