Browse Element(s) Details


Os.26967.1.S2_at

Description gb:CF306746
DB_XREF= gi:33678507
DB_XREF=HDA1--04-L20.g1
CLONE=HDA1--04-L20
TID=Os.26967.1
CNT=13
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.26967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SEC14 - like protein (P0047E11.17), mRNA
FL= gb:AK066793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5061611/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50590NANA1+29371896..29374841Cytochrome P450 family protein
LOC_Os01g50600OsAffx.11548.1.S1_at11/111+29376328..29376881hypothetical protein
LOC_Os01g50610Os.30572.1.S1_at11/111+29377624..29380292SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os01g50616Os.26967.1.S2_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50616Os.26967.1.S1_a_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50622Os.15428.1.S1_at10/111+29399634..29403172wound-responsive protein, putative, expressed
LOC_Os01g50630OsAffx.11549.1.S1_at11/111+29409886..29410506hypothetical protein
LOC_Os01g50630Os.31535.1.A1_at1/111+29409886..29410506hypothetical protein
LOC_Os01g50640NANA1+29411804..29417732retrotransposon protein, putative, unclassified
LOC_Os01g50650Os.28943.1.S1_x_at2/111+29418119..29421610retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.37083.2.S1_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.47130.4.A1_x_at1/111+29422547..29422873retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26967.1.S2_at--1089--7291Chr01:29394064..29394088 (25 bp)
GTGCGGCGTGTAGTTCAGAGAAATA
LOC_Os01g50616
Os.26967.1.S2_at--226--1191Chr01:29393944..29393968 (25 bp)
AGTAGCCTGGAGAAGTATCCCAAGT
LOC_Os01g50616
Os.26967.1.S2_at--15--551Chr01:29393928..29393952 (25 bp)
ATCCCAAGTAGGTCTTTCAGTGCAA
LOC_Os01g50616
Os.26967.1.S2_at--401--8711Chr01:29393878..29393902 (25 bp)
TGTCTCCACTGGATAGCGTCGGTGA
LOC_Os01g50616
Os.26967.1.S2_at--623--5871Chr01:29393855..29393879 (25 bp)
GAGCGAAGACACTAGGGACTGGAAA
LOC_Os01g50616
Os.26967.1.S2_at--873--9451Chr01:29393805..29393829 (25 bp)
TCGGCCGATTTTAGGGACATAGTGA
LOC_Os01g50616
Os.26967.1.S2_at--46--6431Chr01:29393748..29393772 (25 bp)
GATCAAGACGGTGCGGTTTTTTGGC
LOC_Os01g50616
Os.26967.1.S2_at--758--10371Chr01:29393732..29393756 (25 bp)
TTTTTTGGCGCAGCAGGGTACGTGA
LOC_Os01g50616
Os.26967.1.S2_at--500--6391Chr01:29393663..29393687 (25 bp)
GATCGAAGCTTAGTCTTCTCGTCTT
LOC_Os01g50616
Os.26967.1.S2_at--1143--7131Chr01:29393651..29393675 (25 bp)
GTCTTCTCGTCTTTTCTTTGCTATA
LOC_Os01g50616
Os.26967.1.S2_at--867--6351Chr01:29393561..29393585 (25 bp)
GATGCCGAATTTCTATTCATCTACT
LOC_Os01g50616
Target Sequence 
GTGCGGCGTGTAGTTCAGAGAAATAAAGGGTGTAACATGTAGAATTGATATCTTGTTTTCATGATCGATTGAGATGTTAT
GATATATTAGTCAAACGTTCATAAACAAAATGTAAAAACTAGTAGCCTGGAGAAGTATCCCAAGTAGGTCTTTCAGTGCA
AAACTATATTGGAGGGGCTTCTTCTCTGTCTCCACTGGATAGCGTCGGTGAGCGAAGACACTAGGGACTGGAAATTGTCA
GATCTGAATCGATNGGNATTCGGCCGATTTTAGGGACATAGTGACGAATGAAATATGGATGAGAGTTGTGTATCAAGATC
AAGACGGTGCGGTTTTTTGGCGCAGCAGGGTACGTGAAGCGGGCGGTTTTTTNGCGCGACANGGTTCGTGAGGCAGCTAA
AGATCGAAGCTTAGTCTTCTCGTCTTTTCTTTGCTATATTCTGTTGCTTCTTAGTTTTGGGGCCTGAATTTTTTNATCCA
TGTAACTTTTGGCTGTGGATATAGATGCCGAATTTCTATTCATCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26967.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis