Browse Element(s) Details


Os.15428.1.S1_at

Description gb:AK065414.1
DB_XREF= gi:32975432
TID=Os.15428.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0047E11.18 (P0047E11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022J10, full insert sequence.
FL= gb:AK065414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5062210/11wound-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50590NANA1+29371896..29374841Cytochrome P450 family protein
LOC_Os01g50600OsAffx.11548.1.S1_at11/111+29376328..29376881hypothetical protein
LOC_Os01g50610Os.30572.1.S1_at11/111+29377624..29380292SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os01g50616Os.26967.1.S2_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50616Os.26967.1.S1_a_at11/111+29393504..29399043CRAL/TRIO, N-terminus family protein, expressed
LOC_Os01g50622Os.15428.1.S1_at10/111+29399634..29403172wound-responsive protein, putative, expressed
LOC_Os01g50630OsAffx.11549.1.S1_at11/111+29409886..29410506hypothetical protein
LOC_Os01g50630Os.31535.1.A1_at1/111+29409886..29410506hypothetical protein
LOC_Os01g50640NANA1+29411804..29417732retrotransposon protein, putative, unclassified
LOC_Os01g50650Os.28943.1.S1_x_at2/111+29418119..29421610retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.37083.2.S1_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.47130.4.A1_x_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50670OsAffx.21478.1.S1_at11/111+29427498..29428169transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15428.1.S1_at--395--9071Chr01:29400587..29401050 (25 bp)
TGCTTTCCGGTGTAAGGTTCCTATA
LOC_Os01g50622
Os.15428.1.S1_at--1000--7031Chr01:29400520..29400544 (25 bp)
GTACAACCAACACCATCTGAGAGCT
LOC_Os01g50622
Os.15428.1.S1_at--1040--4811NONE
GCTCAGACCAATTCCAATGCACAAG
NONE
Os.15428.1.S1_at--463--5131Chr01:29400387..29400494 (24 bp)
GCACAAGACTTGACAGGCCTGACGA
LOC_Os01g50622
Os.15428.1.S1_at--843--8931Chr01:29400368..29400392 (25 bp)
TGACGATCAACCTTGCTTTGAGGCC
LOC_Os01g50622
Os.15428.1.S1_at--1082--211Chr01:29400333..29400357 (25 bp)
ATTTGGTCCGCAATATGCTGGTCGC
LOC_Os01g50622
Os.15428.1.S1_at--966--1271Chr01:29400007..29400031 (25 bp)
AGATCAGCTTTTCATGTTCCGGGCA
LOC_Os01g50622
Os.15428.1.S1_at--308--2031Chr01:29399823..29399847 (25 bp)
ACTAGTCCCGCCTGAAGTGCATAAA
LOC_Os01g50622
Os.15428.1.S1_at--298--10851Chr01:29399720..29399744 (25 bp)
TTGGGTGCTTTCAATTCGTGGTGGC
LOC_Os01g50622
Os.15428.1.S1_at--1153--51Chr01:29399683..29399707 (25 bp)
ATTGACTCAAAAGGTGCCCATGTTT
LOC_Os01g50622
Os.15428.1.S1_at--663--4551Chr01:29399668..29399692 (25 bp)
GCCCATGTTTGTCACTCACGATTGA
LOC_Os01g50622
Target Sequence 
TGCTTTCCGGTGTAAGGTTCCTATACAAGTGAATAGGCGTATAGCGTATAACAATGGATTGAAAGTTGTACAACCAACAC
CATCTGAGAGCTATGTAAGCTCAGACCAATTCCAATGCACAAGACTTGACAGGCCTGACGATCAACCTTGCTTTGAGGCC
CAAGAGTTTGATTTGGTCCGCAATATGCTGGTCGCTGCTGTTGAGGAACGCTACAAAGATGCTGCTCAATACAGAGATCA
GCTTTTCATGTTCCGGGCAAAGAAAAAGAACATGATTTAACAGTTCCTGAAGGGAGGTGTACATACTAGTCCCGCCTGAA
GTGCATAAAGCCAAACATCAAGAAGAACTTTGTAAATACTTACAGAAGAACCTATACATAGATACATATACATACTAGAA
CATTATTTTGGGTGCTTTCAATTCGTGGTGGCGTTGGTTGTAAAATTGACTCAAAAGGTGCCCATGTTTGTCACTCACGA
TTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis