Browse Element(s) Details


OsAffx.21478.1.S1_at

Description gb:NM_192216.1
DB_XREF= gi:34911515
GEN=P0047E11.21
TID=OsAffx.21478.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0047E11.21 (P0047E11.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5067011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50622Os.15428.1.S1_at10/111+29399634..29403172wound-responsive protein, putative, expressed
LOC_Os01g50630OsAffx.11549.1.S1_at11/111+29409886..29410506hypothetical protein
LOC_Os01g50630Os.31535.1.A1_at1/111+29409886..29410506hypothetical protein
LOC_Os01g50640NANA1+29411804..29417732retrotransposon protein, putative, unclassified
LOC_Os01g50650Os.28943.1.S1_x_at2/111+29418119..29421610retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.37083.2.S1_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.47130.4.A1_x_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50670OsAffx.21478.1.S1_at11/111+29427498..29428169transposon protein, putative, unclassified
LOC_Os01g50680OsAffx.23738.1.S1_x_at11/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50680OsAffx.17117.1.S1_x_at1/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50690Os.50469.1.S1_x_at11/111+29436783..29446209expressed protein
LOC_Os01g50690Os.39477.1.S1_x_at9/111+29436783..29446209expressed protein
LOC_Os01g50700Os.3419.1.S1_a_at11/111+29446608..29451477Dehydrin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21478.1.S1_at--546--10691Chr01:29427571..29427595 (25 bp)
TTGGACCAGGGTCAGCCTTGAACCG
LOC_Os01g50670
OsAffx.21478.1.S1_at--332--1051Chr01:29427578..29427602 (25 bp)
AGGGTCAGCCTTGAACCGGTCGCAG
LOC_Os01g50670
OsAffx.21478.1.S1_at--943--4311Chr01:29427586..29427610 (25 bp)
CCTTGAACCGGTCGCAGCCGAGATG
LOC_Os01g50670
OsAffx.21478.1.S1_at--570--5891Chr01:29427708..29427732 (25 bp)
GAGCTCGACAAGACGACTATGGTCA
LOC_Os01g50670
OsAffx.21478.1.S1_at--979--1491Chr01:29427739..29427763 (25 bp)
AGCACACCGGATTGGCGAGCGGCAC
LOC_Os01g50670
OsAffx.21478.1.S1_at--199--3371Chr01:29427743..29427767 (25 bp)
CACCGGATTGGCGAGCGGCACAAGA
LOC_Os01g50670
OsAffx.21478.1.S1_at--731--3291Chr01:29427761..29427785 (25 bp)
CACAAGAGAGGACGAGCCAATGGCT
LOC_Os01g50670
OsAffx.21478.1.S1_at--190--2971Chr01:29427779..29427803 (25 bp)
AATGGCTCGGATCGCGCCGGGAGAG
LOC_Os01g50670
OsAffx.21478.1.S1_at--893--9712Chr01:29427805..29427829 (25 bp)
TCAAGGGCGGTGGATTGCGACGGCG
LOC_Os01g50670
OsAffx.21478.1.S1_at--537--6011Chr01:29427872..29427896 (25 bp)
GAGGGTTCGATTCAAGGCGTCGGGA
LOC_Os01g50670
OsAffx.21478.1.S1_at--532--7191Chr01:29427890..29427914 (25 bp)
GTCGGGAGCATCTCCGTTGTTCGGG
LOC_Os01g50670
Target Sequence 
TTGGACCAGGGTCAGCCTTGAACCGGTCGCAGCCGAGATGGCGCCGACGTGGCGCCTTCGTGGCAGCCACGCGGGCCAGC
GGGAGGAGGAAGAAGGGGAAGGCCGAGATGGACGGCGGACGGCGGCCGAGTTCACCGGAGCTCGACAAGACGACTATGGT
CAAGGGGGAGCACACCGGATTGGCGAGCGGCACAAGAGAGGACGAGCCAATGGCTCGGATCGCGCCGGGAGAGGTCAAGG
GCGGTGGATTGCGACGGCGGCGGCTGGCGGCGTGCAAAAGGGGAAAAACTGGCGGGGCGGCGAGGGTTCGATTCAAGGCG
TCGGGAGCATCTCCGTTGTTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis