Browse Element(s) Details


Os.39477.1.S1_x_at

Description gb:CF309423
DB_XREF= gi:33681184
DB_XREF=ABF--03-J19.g1
CLONE=ABF--03-J19
TID=Os.39477.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0421H07.9 (P0421H07.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g506909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50640NANA1+29411804..29417732retrotransposon protein, putative, unclassified
LOC_Os01g50650Os.28943.1.S1_x_at2/111+29418119..29421610retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.37083.2.S1_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.47130.4.A1_x_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50670OsAffx.21478.1.S1_at11/111+29427498..29428169transposon protein, putative, unclassified
LOC_Os01g50680OsAffx.23738.1.S1_x_at11/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50680OsAffx.17117.1.S1_x_at1/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50690Os.50469.1.S1_x_at11/111+29436783..29446209expressed protein
LOC_Os01g50690Os.39477.1.S1_x_at9/111+29436783..29446209expressed protein
LOC_Os01g50700Os.3419.1.S1_a_at11/111+29446608..29451477Dehydrin family protein, expressed
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39477.1.S1_x_at--95--6111Chr01:29445649..29445673 (25 bp)
GAGTCCGCAGATGTTGCCATGTGCA
LOC_Os01g50690
Os.39477.1.S1_x_at--754--9711Chr01:29445718..29445742 (25 bp)
TCAAGATGCACAGCGTCGATGCGGC
LOC_Os01g50690
Os.39477.1.S1_x_at--780--6731Chr01:29445751..29445775 (25 bp)
GTTCTTCAACCAACATGGCACTGCG
LOC_Os01g50690
Os.39477.1.S1_x_at--163--7811Chr01:29445792..29445816 (25 bp)
GGTCGACAAGCTGCTGCCGGAAATA
LOC_Os01g50690
Os.39477.1.S1_x_at--1045--7091Chr01:29445847..29445871 (25 bp)
GTCACTCATGGTAACGAATCGCTTG
LOC_Os01g50690
Os.39477.1.S1_x_at--206--3051Chr01:29445863..29445887 (25 bp)
AATCGCTTGATTTATCAGCGCCGGC
LOC_Os01g50690
Os.39477.1.S1_x_at--675--7831Chr01:29445926..29445950 (25 bp)
GGATAAAGCCGGAGTTCCTTCTCTC
LOC_Os01g50690
Os.39477.1.S1_x_at--957--9511Chr01:29445945..29445969 (25 bp)
TCTCTCTGTCTCACCGGTATAGAAG
LOC_Os01g50690
Os.39477.1.S1_x_at--1083--1111Chr01:29445972..29445996 (25 bp)
AGTGACACTAGGCAGCTTCCAGCTG
LOC_Os01g50690
Os.39477.1.S1_x_at--556--7791NONE
GGTGCCACTCATAATGTAACAAGCC
NONE
Os.39477.1.S1_x_at--639--2451NONE
AACAAGCCCGTGTAACATGTGACAT
NONE
Target Sequence 
GAGTCCGCAGATGTTGCCATGTGCAGTGGTAGCAATCCTGCTACTCCCCCAGCTGAAGCTCACAAATTGTCAAGATGCAC
AGCGTCGATGCGGCTGTGCCCTGTTCTTCAACCAACATGGCACTGCGCGTGTTGCGGGAGGACGGTCGACAAGCTGCTGC
CGGAAATATTNTTCACCATGCCCACATCATTTTGGGATGTCACTCATGGTAACGAATCGCTTGATTTATCAGCGCCGGCC
GTCCCATTTTGCCCCNTNTGCGGCATACTGCTGCAGAGGATAAAGCCGGAGTTCCTTCTCTCTGTCTCACCGGTATAGAA
GCTAGTGACACTAGGCAGCTTCCAGCTGTAAGTTGTAATACTGAATACGTCATTAATGCACTTTGAATTATAAAGTTGGT
GGGGGGCTGCTTATAAAAACATGTGCTTAAAATAAGCATGGTTGGTTTGCGATAGGTGTGGTGGTGCCACTCATAATGTA
ACAAGCCCGTGTAACATGTGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39477.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis