Browse Element(s) Details


OsAffx.13680.1.S1_at

Description tigr:9632.m00451
TID=OsAffx.13680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0540011/11hypothetical protein
LOC_Os04g054204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g058803/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g05370OsAffx.22896.1.S1_x_at1/114+2663112..2676270retrotransposon protein, putative, unclassified
LOC_Os04g05380Os.46314.2.S1_x_at5/114+2677293..2679806retrotransposon protein, putative, unclassified
LOC_Os04g05380Os.47114.1.S1_x_at1/114+2677293..2679806retrotransposon protein, putative, unclassified
LOC_Os04g05390NANA4+2685565..2687129hypothetical protein
LOC_Os04g05400OsAffx.13680.1.S1_at11/114+2692267..2694576hypothetical protein
LOC_Os04g05410Os.45976.1.S1_x_at3/114+2695863..2699370transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05420OsAffx.13680.1.S1_at4/114+2702440..2708160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05420Os.45976.1.S1_x_at1/114+2702440..2708160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05430NANA4+2715566..2725255retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13680.1.S1_at--935--1072Chr04:2707820..2707844 (25 bp)
AGGGCAACCAATTACAATCTTCTGT
LOC_Os04g05420
OsAffx.13680.1.S1_at--608--5533Chr04:3020114..3020138 (25 bp)
GAAAGAAGAATCTCGCCCAACTCCT
LOC_Os04g05880
OsAffx.13680.1.S1_at--14--10053Chr04:3020023..3020047 (25 bp)
TAGTACCCACAAGTCGAGGCCAGAA
LOC_Os04g05880
OsAffx.13680.1.S1_at--231--6211Chr04:2692678..2692702 (25 bp)
GAGGCCAGAACTCGCAAGTGCTCTT
LOC_Os04g05400
OsAffx.13680.1.S1_at--1034--5171Chr04:2692665..2692689 (25 bp)
GCAAGTGCTCTTTTCGACCAGAATA
LOC_Os04g05400
OsAffx.13680.1.S1_at--213--9471Chr04:2692632..2692656 (25 bp)
TCTGACGGAACTAGCTTCGCCTTGG
LOC_Os04g05400
OsAffx.13680.1.S1_at--79--4331Chr04:2692613..2692637 (25 bp)
CCTTGGCGCTGCTAAGTCGGGTAAT
LOC_Os04g05400
OsAffx.13680.1.S1_at--76--5251Chr04:2692536..2692560 (25 bp)
GAATCCCCTGGCTTCGATAGGTATA
LOC_Os04g05400
OsAffx.13680.1.S1_at--362--6191Chr04:2692467..2692491 (25 bp)
GAGGACTTCTCTATGTCGGAAATGC
LOC_Os04g05400
OsAffx.13680.1.S1_at--711--7973Chr04:3019683..3019707 (25 bp)
GGATCCTCAATGAACATGCTGGCGT
LOC_Os04g05880
OsAffx.13680.1.S1_at--924--4631Chr04:2692307..2692331 (25 bp)
GCGTATTTCGCATTGATCACAGGGA
LOC_Os04g05400
Target Sequence 
AGGGCAACCAATTACAATCTTCTGTTAATAACAGCGTGGAAGGAAAGAAGAATCTCGCCCAACTCCTAATAGACAAGGAG
AAACAGCCCAAACCCATGAGGCCGATGAATATCAGCAACTGGAGGCCAGGATATAGTACCCACAAGTCGAGGCCAGAACT
CGCAAGTGCTCTTTTCGACCAGAATATAATTCTCTCTGACGGAACTAGCTTCGCCTTGGCGCTGCTAAGTCGGGTAATGA
AAATCCCAGGAGAAAAGTCCAACATTACGACGCCCAAAACCTTCAGCTCCGAATCCCCTGGCTTCGATAGGTATAAAAGA
CTTAAGCAGTTGATTCCTGAACTGAAAAAATGGGACAAGGAGGACTTCTCTATGTCGGAAATGCTGGAACATATCTTCAT
GGCATGGGTGCGTCTTCTGATGTTTGCGTCGGTCCGATGCACAAGGGATTCCCATGCCAAGCAGCTCGCCTGTGGCGGCG
AGCTCACAACCATCCTCTGGATCCTCAATGAACATGCTGGCGTATTTCGCATTGATCACAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis