Browse Element(s) Details


OsAffx.13701.1.S1_at

Description tigr:9632.m00610
TID=OsAffx.13701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0697011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06910OsAffx.25900.1.S1_at11/114+3635322..3637499hypothetical protein
LOC_Os04g06920OsAffx.25901.1.S1_at11/114+3642315..3645048hypothetical protein
LOC_Os04g06930OsAffx.13700.1.S1_at11/114+3648821..3649744hypothetical protein
LOC_Os04g06940OsAffx.20369.1.S1_at5/114+3650044..3651084retrotransposon protein, putative, unclassified, expressed
LOC_Os04g06950NANA4+3653912..3654481transposon protein, putative, unclassified
LOC_Os04g06960NANA4+3655273..3657954retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g06970OsAffx.13701.1.S1_at11/114+3658788..3660363hypothetical protein
LOC_Os04g06980OsAffx.22947.2.S1_x_at3/114+3665832..3668308retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06980OsAffx.22947.3.S1_x_at2/114+3665832..3668308retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06990OsAffx.25902.1.S1_at11/114+3669264..3671306hypothetical protein
LOC_Os04g07060NANA4+3678811..3685533retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13701.1.S1_at--499--5951Chr04:3659821..3659845 (25 bp)
GAGCAAAGACGTTCCTGCAACTGCA
LOC_Os04g06970
OsAffx.13701.1.S1_at--861--6011Chr04:3659857..3659881 (25 bp)
GAGAGGTGTCTTGCCGAAATCCTGC
LOC_Os04g06970
OsAffx.13701.1.S1_at--181--5591Chr04:3659872..3659896 (25 bp)
GAAATCCTGCGTTGCCTGGAGAAGA
LOC_Os04g06970
OsAffx.13701.1.S1_at--845--5371Chr04:3659916..3659940 (25 bp)
GAAGAATCATCTCTACTGCAACTGG
LOC_Os04g06970
OsAffx.13701.1.S1_at--631--8391Chr04:3659942..3659966 (25 bp)
GGCCAGGCTACAGAACCCGGAACAG
LOC_Os04g06970
OsAffx.13701.1.S1_at--588--9791Chr04:3659981..3660005 (25 bp)
TAAGCAAGCTTTACGACTCGAGTAT
LOC_Os04g06970
OsAffx.13701.1.S1_at--993--3371Chr04:3660106..3660130 (25 bp)
CAGCCGATTTTTCCGGAATTGATGA
LOC_Os04g06970
OsAffx.13701.1.S1_at--682--1291Chr04:3660146..3660170 (25 bp)
AGATGTACGACGACCCTACGTATGA
LOC_Os04g06970
OsAffx.13701.1.S1_at--873--5271Chr04:3660208..3660232 (25 bp)
GAATGGGTGCGTCTCCTGATTAACT
LOC_Os04g06970
OsAffx.13701.1.S1_at--836--4271Chr04:3660222..3660246 (25 bp)
CCTGATTAACTCGTCCGTCAAATGT
LOC_Os04g06970
OsAffx.13701.1.S1_at--42--8911Chr04:3660248..3660272 (25 bp)
TGAGAGATTCGCATGCCAAGCAGCT
LOC_Os04g06970
Target Sequence 
GAGCAAAGACGTTCCTGCAACTGCAAGAGAACGAAAGAGAGGTGTCTTGCCGAAATCCTGCGTTGCCTGGAGAAGAAGCC
AGGTGAAAGAGTACTGAAGAATCATCTCTACTGCAACTGGAGGCCAGGCTACAGAACCCGGAACAGGGAGCCAGGCTTTA
TAAGCAAGCTTTACGACTCGAGTATTATTTTGTCGGATGGAGTTAAACTAGCCGAAGTAATCCTGAGATGGCTAAGTAGT
GGTTACAGGGACAACATTCTGTACATCAAATCAGAGGATAAATTTCAGCCGATTTTTCCGGAATTGATGAAAATCATGAA
ATGCAAGATGTACGACGACCCTACGTATGACAAAAGATTGAGCAAACTGCTGGAACACATCTTCAAGGAATGGGTGCGTC
TCCTGATTAACTCGTCCGTCAAATGTATGAGAGATTCGCATGCCAAGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis