Browse Element(s) Details


OsAffx.13753.1.S1_at

Description tigr:9632.m00921
TID=OsAffx.13753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1048011/11hypothetical protein
LOC_Os08g219802/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10434Os.53788.1.S1_at11/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.23696.1.S1_x_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.988.1.S1_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10450OsAffx.13751.1.S1_at10/114+5663294..5664870hypothetical protein
LOC_Os04g10450OsAffx.28563.1.S1_x_at1/114+5663294..5664870hypothetical protein
LOC_Os04g10460OsAffx.25959.2.S1_at11/114+5666494..5669400Amidase family protein, expressed
LOC_Os04g10470NANA4+5670693..5671064hypothetical protein
LOC_Os04g10480OsAffx.13753.1.S1_at11/114+5680124..5680792hypothetical protein
LOC_Os04g10490OsAffx.13754.1.S1_at11/114+5684894..5685166hypothetical protein
LOC_Os04g10500OsAffx.3764.1.S1_at11/114+5686035..5687404hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13753.1.S1_at--944--4831Chr04:5680210..5680234 (25 bp)
GCTCAATCGACCACACATATCAACG
LOC_Os04g10480
OsAffx.13753.1.S1_at--652--10331Chr04:5680622..5680646 (25 bp)
TTTCAAGTTAGGATCAACATGTTCA
LOC_Os04g10480
OsAffx.13753.1.S1_at--1037--2096Chr08:13133116..13133140 (25 bp)
ACATGTTCAAGGGTACACTTGCCTT
LOC_Os08g21980
OsAffx.13753.1.S1_at--827--9716Chr08:13133122..13133146 (25 bp)
TCAAGGGTACACTTGCCTTTACCCA
LOC_Os08g21980
OsAffx.13753.1.S1_at--529--10112Chr04:5680656..5680680 (25 bp)
TTGCCTTTACCCACGAGATCGTTAG
LOC_Os04g10480
OsAffx.13753.1.S1_at--45--5951Chr04:5680670..5680694 (25 bp)
GAGATCGTTAGACGGAACCTTCACC
LOC_Os04g10480
OsAffx.13753.1.S1_at--539--6772Chr04:5680676..5680700 (25 bp)
GTTAGACGGAACCTTCACCTGCAAC
LOC_Os04g10480
OsAffx.13753.1.S1_at--605--1931Chr04:5680681..5680705 (25 bp)
ACGGAACCTTCACCTGCAACAACAA
LOC_Os04g10480
OsAffx.13753.1.S1_at--595--9251Chr04:5680708..5680732 (25 bp)
TCCTCAGCAACAGCGTCTATACGAT
LOC_Os04g10480
OsAffx.13753.1.S1_at--412--2151Chr04:5680717..5680741 (25 bp)
ACAGCGTCTATACGATCGCAGAAAG
LOC_Os04g10480
OsAffx.13753.1.S1_at--419--9931Chr04:5680727..5680751 (25 bp)
TACGATCGCAGAAAGGAGCAAACAA
LOC_Os04g10480
Target Sequence 
GCTCAATCGACCACACATATCAACGATAATTTTTCAAGTTAGGATCAACATGTTCAAGGGTACACTTGCCTTTACCCACG
AGATCGTTAGACGGAACCTTCACCTGCAACAACAACCTCCTCAGCAACAGCGTCTATACGATCGCAGAAAGGAGCAAACA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis