Browse Element(s) Details


OsAffx.13751.1.S1_at

Description tigr:9632.m00918
TID=OsAffx.13751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1045010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10420Os.54559.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420Os.37514.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.3763.1.S1_s_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.23335.1.S1_x_at8/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.20160.1.S1_x_at1/114+5635855..5646506expressed protein
LOC_Os04g10420Os.54153.1.S1_at1/114+5635855..5646506expressed protein
LOC_Os04g10434Os.53788.1.S1_at11/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.23696.1.S1_x_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.988.1.S1_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10450OsAffx.13751.1.S1_at10/114+5663294..5664870hypothetical protein
LOC_Os04g10450OsAffx.28563.1.S1_x_at1/114+5663294..5664870hypothetical protein
LOC_Os04g10460OsAffx.25959.2.S1_at11/114+5666494..5669400Amidase family protein, expressed
LOC_Os04g10470NANA4+5670693..5671064hypothetical protein
LOC_Os04g10480OsAffx.13753.1.S1_at11/114+5680124..5680792hypothetical protein
LOC_Os04g10490OsAffx.13754.1.S1_at11/114+5684894..5685166hypothetical protein
LOC_Os04g10500OsAffx.3764.1.S1_at11/114+5686035..5687404hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13751.1.S1_at--81--1631Chr04:5663327..5663351 (25 bp)
AGCGTGGATCACTGGCGATTGCATG
LOC_Os04g10450
OsAffx.13751.1.S1_at--641--1631Chr04:5663373..5663397 (25 bp)
AGCGGTGGACGAGCAACATCAAGGT
LOC_Os04g10450
OsAffx.13751.1.S1_at--854--1511Chr04:5663403..5663427 (25 bp)
AGCAGCGGGATATGCCCCTGGGATC
LOC_Os04g10450
OsAffx.13751.1.S1_at--539--10131Chr04:5663413..5663437 (25 bp)
TATGCCCCTGGGATCTATGGCGATA
LOC_Os04g10450
OsAffx.13751.1.S1_at--814--6491Chr04:5663449..5663473 (25 bp)
GATAGATGGCAGTTGCCTGGACAAG
LOC_Os04g10450
OsAffx.13751.1.S1_at--163--6131Chr04:5663486..5663510 (25 bp)
GAGTGGTGCCTCCTAGTCTATCTGT
LOC_Os04g10450
OsAffx.13751.1.S1_at--826--7151NONE
GTCTATCTGTTTACACATGCACAAC
NONE
OsAffx.13751.1.S1_at--983--5771Chr04:5664763..5664787 (25 bp)
GACGACGACTGTTTATGTCATGCTG
LOC_Os04g10450
OsAffx.13751.1.S1_at--247--7131Chr04:5664779..5664803 (25 bp)
GTCATGCTGATTTTGGAGTGCACTG
LOC_Os04g10450
OsAffx.13751.1.S1_at--101--6112Chr04:5664794..5664818 (25 bp)
GAGTGCACTGTCTCCAAACATTTGC
LOC_Os04g10450
OsAffx.13751.1.S1_at--804--9134Chr09:1718060..1718084 (25 bp)
TCCAAACATTTGCTCCAACTTCCAA
NONE
Target Sequence 
AGCGTGGATCACTGGCGATTGCATGATGGAGGAGTGGCTGTGGTGGAGCGGTGGACGAGCAACATCAAGGTGGAGGAGCA
GCGGGATATGCCCCTGGGATCTATGGCGATAGCGTGGTGGATGATAGATGGCAGTTGCCTGGACAAGCAGTGTCGGGGCG
AGTGGTGCCTCCTAGTCTATCTGTTTACACATGCACAACACATGATGGGCATCGACAACGAGCTAGAAGATCAAAGTGAC
GATGGGTTACGTGAAGACGACGACTGTTTATGTCATGCTGATTTTGGAGTGCACTGTCTCCAAACATTTGCTCCAACTTC
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis