Browse Element(s) Details


Os.54559.1.S1_at

Description gb:AK105704.1
DB_XREF= gi:32990913
TID=Os.54559.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E01, full insert sequence.
FL= gb:AK105704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1042011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10390OsAffx.25108.4.S1_s_at11/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10390OsAffx.25108.1.S1_x_at5/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10400Os.49531.1.S1_at9/114+5616756..5620495Electron transfer flavoprotein beta-subunit, putative, expressed
LOC_Os04g10410OsAffx.25959.1.S1_at11/114+5624937..5629621Amidase family protein, expressed
LOC_Os04g10420Os.54559.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420Os.37514.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.3763.1.S1_s_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.23335.1.S1_x_at8/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.20160.1.S1_x_at1/114+5635855..5646506expressed protein
LOC_Os04g10420Os.54153.1.S1_at1/114+5635855..5646506expressed protein
LOC_Os04g10434Os.53788.1.S1_at11/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.23696.1.S1_x_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.988.1.S1_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10450OsAffx.13751.1.S1_at10/114+5663294..5664870hypothetical protein
LOC_Os04g10450OsAffx.28563.1.S1_x_at1/114+5663294..5664870hypothetical protein
LOC_Os04g10460OsAffx.25959.2.S1_at11/114+5666494..5669400Amidase family protein, expressed
LOC_Os04g10470NANA4+5670693..5671064hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54559.1.S1_at--654--7032Chr04:5640477..5640501 (25 bp)
GTACAAAACCTTTCCAGCCATTAGA
LOC_Os04g10420
Os.54559.1.S1_at--619--8611Chr04:5640452..5640476 (25 bp)
TGGTGTGTATTTGACTGCTAGGATT
LOC_Os04g10420
Os.54559.1.S1_at--652--9071Chr04:5640437..5640461 (25 bp)
TGCTAGGATTATGGTACCTCCTGCC
LOC_Os04g10420
Os.54559.1.S1_at--266--9271Chr04:5640419..5640443 (25 bp)
TCCTGCCCTCAAGGACTGCAGAAAG
LOC_Os04g10420
Os.54559.1.S1_at--524--5051Chr04:5640402..5640426 (25 bp)
GCAGAAAGCCTCGTGTGTGATCATT
LOC_Os04g10420
Os.54559.1.S1_at--12--6431Chr04:5640384..5640408 (25 bp)
GATCATTTGGCTGGGTTTTCTTTAT
LOC_Os04g10420
Os.54559.1.S1_at--703--10391Chr04:5640363..5640387 (25 bp)
TTATTCTTCCAAGCCTTGGGTTGAA
LOC_Os04g10420
Os.54559.1.S1_at--1062--6651Chr04:5640344..5640368 (25 bp)
GTTGAAATGAACCTGACTCTGAAAG
LOC_Os04g10420
Os.54559.1.S1_at--1094--2531Chr04:5640301..5640325 (25 bp)
AACTCTTAACTTCTGTATTTCATTG
LOC_Os04g10420
Os.54559.1.S1_at--991--6651Chr04:5640277..5640301 (25 bp)
GTTGCAATGCTATCTACCCTAGCTA
LOC_Os04g10420
Os.54559.1.S1_at--288--1171Chr04:5640228..5640252 (25 bp)
AGTAATTCCATCTCAAACTCATTGT
LOC_Os04g10420
Target Sequence 
GTACAAAACCTTTCCAGCCATTAGATGGTGTGTATTTGACTGCTAGGATTATGGTACCTCCTGCCCTCAAGGACTGCAGA
AAGCCTCGTGTGTGATCATTTGGCTGGGTTTTCTTTATTCTTCCAAGCCTTGGGTTGAAATGAACCTGACTCTGAAAGAG
TTGTTCCATTTTATTTAACTCTTAACTTCTGTATTTCATTGTTGCAATGCTATCTACCCTAGCTAAAGTTTAACATGTTC
TCAGTGTTAAGTAATTCCATCTCAAACTCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis