Browse Element(s) Details


OsAffx.25959.1.S1_at

Description tigr:9632.m00913
TID=OsAffx.25959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Amidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1041011/11Amidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10380Os.24059.1.A1_at9/114+5589001..5610285glycine-rich protein, putative, expressed
LOC_Os04g10390OsAffx.25108.4.S1_s_at11/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10390OsAffx.25108.1.S1_x_at5/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10400Os.49531.1.S1_at9/114+5616756..5620495Electron transfer flavoprotein beta-subunit, putative, expressed
LOC_Os04g10410OsAffx.25959.1.S1_at11/114+5624937..5629621Amidase family protein, expressed
LOC_Os04g10420Os.54559.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420Os.37514.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.3763.1.S1_s_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.23335.1.S1_x_at8/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.20160.1.S1_x_at1/114+5635855..5646506expressed protein
LOC_Os04g10420Os.54153.1.S1_at1/114+5635855..5646506expressed protein
LOC_Os04g10434Os.53788.1.S1_at11/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.23696.1.S1_x_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.988.1.S1_at1/114+5649164..5655744Amidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25959.1.S1_at--225--7731Chr04:5628964..5628988 (25 bp)
GGTGCAGTTGTAATCGAAAACCTCG
LOC_Os04g10410
OsAffx.25959.1.S1_at--845--5511Chr04:5628979..5629003 (25 bp)
GAAAACCTCGAGATAGCTAATTTGA
LOC_Os04g10410
OsAffx.25959.1.S1_at--20--2331Chr04:5629025..5629049 (25 bp)
AAAGTGGATTGCTCACCGCATTGCT
LOC_Os04g10410
OsAffx.25959.1.S1_at--364--2691Chr04:5629060..5629084 (25 bp)
AAGCTAAACCTGAACAACTATCTGT
LOC_Os04g10410
OsAffx.25959.1.S1_at--828--4411Chr04:5629101..5629125 (25 bp)
GCCAGTTCGTTCTCTCGCTGAAATA
LOC_Os04g10410
OsAffx.25959.1.S1_at--410--3431Chr04:5629286..5629310 (25 bp)
CAGAGCATCTTGCTGATGTCTGAAA
LOC_Os04g10410
OsAffx.25959.1.S1_at--1081--731Chr04:5629301..5629325 (25 bp)
ATGTCTGAAAACACAGCCGGGATCG
LOC_Os04g10410
OsAffx.25959.1.S1_at--191--5051Chr04:5629331..5629355 (25 bp)
GCAGAGAAGGCTGCGATCCGTCGTC
LOC_Os04g10410
OsAffx.25959.1.S1_at--234--4831Chr04:5629387..5629411 (25 bp)
GCTCATGAACGATCATCAGCTGGAC
LOC_Os04g10410
OsAffx.25959.1.S1_at--1123--2911Chr04:5629500..5629524 (25 bp)
AAGGAGTCCCCTTTGGTGTCTGCTT
LOC_Os04g10410
OsAffx.25959.1.S1_at--18--871Chr04:5629562..5629586 (25 bp)
ATGGCTTATGCCTTCGAGCAGGTTA
LOC_Os04g10410
Target Sequence 
GGTGCAGTTGTAATCGAAAACCTCGAGATAGCTAATTTGAGTGTCATATTCGATGGCACTAAAAGTGGATTGCTCACCGC
ATTGCTGGCCGAGTTCAAGCTAAACCTGAACAACTATCTGTCAGACTTATCATACTCGCCAGTTCGTTCTCTCGCTGAAA
TAATTGCATTCAACAATGCACATCCTGTCGAAGAGGAGCTGAAAGAGCATGGACAGAGCATCTTGCTGATGTCTGAAAAC
ACAGCCGGGATCGGCCCTGCAGAGAAGGCTGCGATCCGTCGTCTCAACGAGCTGTCAGTGAATGGGGTCGAGAAGCTCAT
GAACGATCATCAGCTGGACGCCATCGTGACGCCGGACTCCGCCGCCGCCGTCGTCCTCGCCTTCCATGGCCTCCCCGGCG
TGGTTGTGCCGGCAGGGTACGACGAGAAAGGAGTCCCCTTTGGTGTCTGCTTCGGTGGATTGAAGGGGTACGAGCCGAGG
CTAATTGAGATGGCTTATGCCTTCGAGCAGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis