Browse Element(s) Details


Os.24059.1.A1_at

Description gb:CA761137
DB_XREF= gi:25805176
DB_XREF=BR060002B20H01.ab1
CLONE=BR060002B20H01.ab1
TID=Os.24059.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24059 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_199513.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g103809/11glycine-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10340NANA4+5568650..5568850hypothetical protein
LOC_Os04g10350Os.27251.1.S1_at11/114+5570432..5572705oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g10360OsAffx.13747.1.S1_at11/114+5576800..5579076Subtilase family protein, expressed
LOC_Os04g10370OsAffx.25958.1.S1_at11/114+5580662..5582967hypothetical protein
LOC_Os04g10380Os.24059.1.A1_at9/114+5589001..5610285glycine-rich protein, putative, expressed
LOC_Os04g10390OsAffx.25108.4.S1_s_at11/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10390OsAffx.25108.1.S1_x_at5/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10400Os.49531.1.S1_at9/114+5616756..5620495Electron transfer flavoprotein beta-subunit, putative, expressed
LOC_Os04g10410OsAffx.25959.1.S1_at11/114+5624937..5629621Amidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24059.1.A1_at--179--1671Chr04:5609686..5609710 (25 bp)
AGCCCTGACCCTGATAGATTCTGGG
LOC_Os04g10380
Os.24059.1.A1_at--849--2011NONE
ACTTATAGGCTTACAAGGGCACTGA
NONE
Os.24059.1.A1_at--20--631Chr04:5609747..5609771 (25 bp)
ATGCTTGGTGCTGACAAGCCACCTT
LOC_Os04g10380
Os.24059.1.A1_at--294--2651Chr04:5609762..5609786 (25 bp)
AAGCCACCTTTTATCTCATGGTTGG
LOC_Os04g10380
Os.24059.1.A1_at--1066--7911Chr04:5609781..5609805 (25 bp)
GGTTGGTCAGCCACATTCTGAATTT
LOC_Os04g10380
Os.24059.1.A1_at--1040--6191Chr04:5609808..5609832 (25 bp)
GAGGCAGCCTAGTGATCTAAACCTG
LOC_Os04g10380
Os.24059.1.A1_at--960--8031Chr04:5609854..5609878 (25 bp)
GGAGTATTCCAGACTAGTGCAGATA
LOC_Os04g10380
Os.24059.1.A1_at--575--6531Chr04:5609951..5609975 (25 bp)
GATTTCTGGAGTTCTTAGGCTTAGG
LOC_Os04g10380
Os.24059.1.A1_at--462--9311Chr04:5610116..5610140 (25 bp)
TCCCGGTTCATTTTGTCAGCGATAC
LOC_Os04g10380
Os.24059.1.A1_at--966--4591Chr04:5610134..5610158 (25 bp)
GCGATACCTGGACTCTTTACAAAAT
LOC_Os04g10380
Os.24059.1.A1_at--548--3911NONE
CTGGAGGCAGCTTTGTGGGTTATCT
NONE
Target Sequence 
AGCCCTGACCCTGATAGATTCTGGGCAATGTAATCACTTATAGGCTTACAAGGGCACTGAAATGCTTGGTGCTGACAAGC
CACCTTTTATCTCATGGTTGGTCAGCCACATTCTGAATTTGAGAGGCAGCCTAGTGATCTAAACCTGCAACTTTTCCTCC
AATTTCTAGGAGTATTCCAGACTAGTGCAGATATATTAAAGTTAGATATGCATTAGCATACATTTTGATCGTGGTTAGAA
TAGCCTTGGTATTTTGAGTAAACTAGATTTCTGGAGTTCTTAGGCTTAGGTTTAAGTCTTGTTTTGAGTGTACAGGTGGA
ACAGGTCAGATCTGTNGTACATTGTGTAAGTAATAGTGACCNTTGCTAATTCAATTGTAGAGTAGTGCTTAGAAAACGTT
GCTTGGTTCTTTTTTTCCCTTTCCTGTTTTTCCCGGTTCATTTTGTCAGCGATACCTGGACTCTTTACAAAATGCCATGA
TAATTAGTGGCAAGAATCTTAGAGTAAAAGGGTTTTTCTGGAGGCAGCTTTGTGGGTTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24059.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis