Browse Element(s) Details


OsAffx.25958.1.S1_at

Description tigr:9632.m00909
TID=OsAffx.25958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1037011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10330NANA4+5557728..5558519hypothetical protein
LOC_Os04g10340NANA4+5568650..5568850hypothetical protein
LOC_Os04g10350Os.27251.1.S1_at11/114+5570432..5572705oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g10360OsAffx.13747.1.S1_at11/114+5576800..5579076Subtilase family protein, expressed
LOC_Os04g10370OsAffx.25958.1.S1_at11/114+5580662..5582967hypothetical protein
LOC_Os04g10380Os.24059.1.A1_at9/114+5589001..5610285glycine-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25958.1.S1_at--62--10651Chr04:5582885..5582909 (25 bp)
TTCCTAGTGTCTCTGGTGGTGATTC
LOC_Os04g10370
OsAffx.25958.1.S1_at--1107--8171Chr04:5582843..5582867 (25 bp)
GGAAGCCTAGGCAATCTTTGCGGAA
LOC_Os04g10370
OsAffx.25958.1.S1_at--208--3071Chr04:5582831..5582855 (25 bp)
AATCTTTGCGGAACAGCGGCTTGGC
LOC_Os04g10370
OsAffx.25958.1.S1_at--661--3391Chr04:5582818..5582842 (25 bp)
CAGCGGCTTGGCTCGAGATGAACGA
LOC_Os04g10370
OsAffx.25958.1.S1_at--990--651Chr04:5582801..5582825 (25 bp)
ATGAACGAGGATGGCCAGACGACGA
LOC_Os04g10370
OsAffx.25958.1.S1_at--841--3471Chr04:5582365..5582389 (25 bp)
CAGGTCACTGCCAAGTGGGTCTAGG
LOC_Os04g10370
OsAffx.25958.1.S1_at--732--1091Chr04:5582352..5582376 (25 bp)
AGTGGGTCTAGGACGAAGTGCTCTA
LOC_Os04g10370
OsAffx.25958.1.S1_at--702--7931Chr04:5581109..5581133 (25 bp)
GGATATCATATGCTACCAACAGGTA
LOC_Os04g10370
OsAffx.25958.1.S1_at--206--10191Chr04:5581072..5581096 (25 bp)
TATAGGTCTCTCAAGTATCACTCGA
LOC_Os04g10370
OsAffx.25958.1.S1_at--32--6931Chr04:5580736..5580760 (25 bp)
GTATGTTTGGTGATGACCTCTCTAC
LOC_Os04g10370
OsAffx.25958.1.S1_at--501--8931Chr04:5580723..5580747 (25 bp)
TGACCTCTCTACATGTTGGCTACGA
LOC_Os04g10370
Target Sequence 
TTCCTAGTGTCTCTGGTGGTGATTCTTGGGGTGTCTTGAGGAGGAAGCCTAGGCAATCTTTGCGGAACAGCGGCTTGGCT
CGAGATGAACGAGGATGGCCAGACGACGATGATGCCGAAGCGGCGGCGCTCCGGTGCGTGCTCCAGGGCATCGTCGGCGT
GGCTTGCGTTCCGCTGAGGGTGAGGGACAGAGAAAAGGGCAAGCCCAGGTCACTGCCAAGTGGGTCTAGGACGAAGTGCT
CTAGGTGGAAGGGAGAGGTGTGGGTATGTTACAGATATCAACGGATATCATATGCTACCAACAGGTATCAGTCAATACCT
ATAGGTCTCTCAAGTATCACTCGATACCTGGTATGTTTGGTGATGACCTCTCTACATGTTGGCTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis