Browse Element(s) Details


OsAffx.13747.1.S1_at

Description tigr:9632.m00908
TID=OsAffx.13747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PA domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1036011/11Subtilase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10320OsAffx.25956.1.S1_at11/114+5550751..5553477hypothetical protein
LOC_Os04g10330NANA4+5557728..5558519hypothetical protein
LOC_Os04g10340NANA4+5568650..5568850hypothetical protein
LOC_Os04g10350Os.27251.1.S1_at11/114+5570432..5572705oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g10360OsAffx.13747.1.S1_at11/114+5576800..5579076Subtilase family protein, expressed
LOC_Os04g10370OsAffx.25958.1.S1_at11/114+5580662..5582967hypothetical protein
LOC_Os04g10380Os.24059.1.A1_at9/114+5589001..5610285glycine-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010103biological_processstomatal complex morphogenesis
GO:0042127biological_processregulation of cell proliferation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009897cellular_componentexternal side of plasma membrane
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13747.1.S1_at--973--8231Chr04:5577327..5577351 (25 bp)
GGCACGCCGGTGATCGACCTGTCGA
LOC_Os04g10360
OsAffx.13747.1.S1_at--234--4711Chr04:5577265..5577289 (25 bp)
GCTGGTGAACCCGACCAAGGCGCTG
LOC_Os04g10360
OsAffx.13747.1.S1_at--333--4911Chr04:5577167..5577191 (25 bp)
GCTTCGTCAACGACATGATCGCGCA
LOC_Os04g10360
OsAffx.13747.1.S1_at--971--531Chr04:5577150..5577174 (25 bp)
ATCGCGCAGCCGCTGAAGAACGTCA
LOC_Os04g10360
OsAffx.13747.1.S1_at--880--8971Chr04:5577137..5577161 (25 bp)
TGAAGAACGTCACTTGCGCCAAGTC
LOC_Os04g10360
OsAffx.13747.1.S1_at--753--9691Chr04:5577089..5577113 (25 bp)
TCAACTACCCGTCCTTCTTGGTGAC
LOC_Os04g10360
OsAffx.13747.1.S1_at--1075--2711Chr04:5577009..5577033 (25 bp)
AAGCAGCCGCTCGAGGTGTACAGAG
LOC_Os04g10360
OsAffx.13747.1.S1_at--954--8011Chr04:5576906..5576930 (25 bp)
GGAGGGAGTTCACCGTCAAGTTCAC
LOC_Os04g10360
OsAffx.13747.1.S1_at--226--7071Chr04:5576892..5576916 (25 bp)
GTCAAGTTCACGAGAGGCCGCAACG
LOC_Os04g10360
OsAffx.13747.1.S1_at--138--10691Chr04:5576838..5576862 (25 bp)
TTGCGGTGGGTCTCAGGCAAGCATT
LOC_Os04g10360
OsAffx.13747.1.S1_at--446--7791Chr04:5576830..5576854 (25 bp)
GGTCTCAGGCAAGCATTCCGTTCGA
LOC_Os04g10360
Target Sequence 
GGCACGCCGGTGATCGACCTGTCGACGGGCGCGCCGGCGAGCTACTTCGCCATGGGCGCCGGGCTGGTGAACCCGACCAA
GGCGCTGGACCCGGGGCTCGTCTACGACCTCACCGCCGACGACTTGGTCCCCTACATCTGCGGCCTCGGCTACAACGACA
GCTTCGTCAACGACATGATCGCGCAGCCGCTGAAGAACGTCACTTGCGCCAAGTCCAAGAAGATCCAAGGCAAGGACCTC
AACTACCCGTCCTTCTTGGTGACGCTCACCGCGGCGGCGCCGGTGGCCACGGCGAGGCGCACGGCGACCAACATCGGGAA
GCAGCCGCTCGAGGTGTACAGAGCGGAGGTCGTCGCGCCGCCGGGCGTCGCCGTCGAGGTGGTGCCGAACAGGCTGGAGT
TCGGCGGCGCCGCGCTCCAGAGGAGGGAGTTCACCGTCAAGTTCACGAGAGGCCGCAACGCCGCCGTCAATGGCGCGGCG
GAGGGCAGCTTGCGGTGGGTCTCAGGCAAGCATTCCGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis