Browse Element(s) Details


OsAffx.25956.1.S1_at

Description tigr:9632.m00904
TID=OsAffx.25956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1032011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10270Os.31312.5.S1_x_at5/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10270Os.31312.2.S1_x_at4/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_x_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10290OsAffx.25954.1.S1_at10/114+5539079..5541212hypothetical protein
LOC_Os04g10300OsAffx.30349.1.S1_at11/114+5543179..5545562hypothetical protein
LOC_Os04g10300Os.20851.1.A1_x_at1/114+5543179..5545562hypothetical protein
LOC_Os04g10310OsAffx.13745.1.S1_at11/114+5546820..5550446hypothetical protein
LOC_Os04g10320OsAffx.25956.1.S1_at11/114+5550751..5553477hypothetical protein
LOC_Os04g10330NANA4+5557728..5558519hypothetical protein
LOC_Os04g10340NANA4+5568650..5568850hypothetical protein
LOC_Os04g10350Os.27251.1.S1_at11/114+5570432..5572705oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g10360OsAffx.13747.1.S1_at11/114+5576800..5579076Subtilase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25956.1.S1_at--349--2692Chr04:12271023..12271047 (25 bp)
AAGCTCGAACTTTACTCAAATCTGA
NONE
OsAffx.25956.1.S1_at--724--5571Chr04:5551215..5551235 (21 bp)
GAAATGGAATCCATCGTTCCACCTC
LOC_Os04g10320
OsAffx.25956.1.S1_at--572--6691Chr04:5551200..5551224 (25 bp)
GTTCCACCTCCATATGATGCCATAG
LOC_Os04g10320
OsAffx.25956.1.S1_at--1013--8851Chr04:5551186..5551210 (25 bp)
TGATGCCATAGATGTGCCACCGATG
LOC_Os04g10320
OsAffx.25956.1.S1_at--240--9591Chr04:5551156..5551180 (25 bp)
TCTTGCACTGCATTCGACGAGATCT
LOC_Os04g10320
OsAffx.25956.1.S1_at--896--4451Chr04:5551120..5551144 (25 bp)
GCCTAGCAGGCTACCGCTTATGGTG
LOC_Os04g10320
OsAffx.25956.1.S1_at--338--7231Chr04:5551084..5551108 (25 bp)
GTCGCATAGTTACATCCTCTTAGGG
LOC_Os04g10320
OsAffx.25956.1.S1_at--741--7851Chr04:5551061..5551085 (25 bp)
GGTATTCACATCAAAACCCGCAAAT
LOC_Os04g10320
OsAffx.25956.1.S1_at--273--811Chr04:5550975..5550999 (25 bp)
ATGGTGGCTGCTGTCCTTAAGGACA
LOC_Os04g10320
OsAffx.25956.1.S1_at--1087--831Chr04:5550937..5550961 (25 bp)
ATGGAGCCCTTCTGGAAGCAGAGAG
LOC_Os04g10320
OsAffx.25956.1.S1_at--196--1751Chr04:5550833..5550857 (25 bp)
ACCTCAATTTTGGAGCTGTTGGACA
LOC_Os04g10320
Target Sequence 
AAGCTCGAACTTTACTCAAATCTGAGCGATTTAGATTGGGATATCAAAGGATTCTTGAGGGAAATCGAAGAGGAAATGGA
ATCCATCGTTCCACCTCCATATGATGCCATAGATGTGCCACCGATGACCTCTCTTGCACTGCATTCGACGAGATCTAACC
AGGGGCCGCCTAGCAGGCTACCGCTTATGGTGGGGCATAGGCGGTCGCATAGTTACATCCTCTTAGGGTATTCACATCAA
AACCCGCAAATGCTACCTATAGCATCAGTTAAGACAAAGGTCACAACGACCGAGGGGCATCAATCGGGGGGCATGGTGGC
TGCTGTCCTTAAGGACATGGGCATACAGGCATGGAGCCCTTCTGGAAGCAGAGAGAATGAAGCTAAGAGCTCTGGTGCTG
GCAGTACAACCCACCATTGCCACAGCTCGTCGGTTGACAGCTTCATGATGGGGAACCTCAATTTTGGAGCTGTTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis