Browse Element(s) Details


OsAffx.30349.1.S1_at

Description tigr:9632.m00902
TID=OsAffx.30349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1030011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10250OsAffx.14731.1.S1_at11/114+5514966..5518273hypothetical protein
LOC_Os04g10250OsAffx.14731.2.S1_at2/114+5514966..5518273hypothetical protein
LOC_Os04g10260OsAffx.25953.1.S1_at11/114+5519583..5525480hypothetical protein
LOC_Os04g10270Os.31312.5.S1_x_at5/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10270Os.31312.2.S1_x_at4/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_x_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10290OsAffx.25954.1.S1_at10/114+5539079..5541212hypothetical protein
LOC_Os04g10300OsAffx.30349.1.S1_at11/114+5543179..5545562hypothetical protein
LOC_Os04g10300Os.20851.1.A1_x_at1/114+5543179..5545562hypothetical protein
LOC_Os04g10310OsAffx.13745.1.S1_at11/114+5546820..5550446hypothetical protein
LOC_Os04g10320OsAffx.25956.1.S1_at11/114+5550751..5553477hypothetical protein
LOC_Os04g10330NANA4+5557728..5558519hypothetical protein
LOC_Os04g10340NANA4+5568650..5568850hypothetical protein
LOC_Os04g10350Os.27251.1.S1_at11/114+5570432..5572705oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30349.1.S1_at--457--6011Chr04:5545504..5545528 (25 bp)
GAGAGCTTAGGAGGCCCCGTGCACT
LOC_Os04g10300
OsAffx.30349.1.S1_at--748--5831Chr04:5545479..5545503 (25 bp)
GACCTCTAACCTATACGACATGCTA
LOC_Os04g10300
OsAffx.30349.1.S1_at--250--1351Chr04:5545413..5545470 (25 bp)
AGAGTTGCAACTATGTGTCCCTATT
LOC_Os04g10300
OsAffx.30349.1.S1_at--402--2531Chr04:5545405..5545462 (25 bp)
AACTATGTGTCCCTATTGCTTGTCT
LOC_Os04g10300
OsAffx.30349.1.S1_at--711--10711Chr04:5545390..5545414 (25 bp)
TTGCTTGTCTCTCTAGAAGTCCATT
LOC_Os04g10300
OsAffx.30349.1.S1_at--536--5791Chr04:5544457..5544481 (25 bp)
GACGCACATGCGTTTTGTGGGTTAT
LOC_Os04g10300
OsAffx.30349.1.S1_at--123--2471Chr04:5543352..5543376 (25 bp)
AACAACCGGTGGGTCGATATCACGC
LOC_Os04g10300
OsAffx.30349.1.S1_at--556--6511Chr04:5543337..5543361 (25 bp)
GATATCACGCCATTACCTGGAGCAT
LOC_Os04g10300
OsAffx.30349.1.S1_at--1110--10451Chr04:5543325..5543349 (25 bp)
TTACCTGGAGCATTCATCATCAATA
LOC_Os04g10300
OsAffx.30349.1.S1_at--597--4631Chr04:5543297..5543321 (25 bp)
GCGATCTCATGCAGGTACCTGTTGA
LOC_Os04g10300
OsAffx.30349.1.S1_at--350--2174Chr02:12179286..12179343 (24 bp)
ACACCGGCCTAGGAGATCTTCTTAG
NONE
Target Sequence 
GAGAGCTTAGGAGGCCCCGTGCACTGACCTCTAACCTATACGACATGCTAAGGAGAGTAGAGTTGCAACTATGTGTCCCT
ATTGCTTGTCTCTCTAGAAGTCCATTAAGCTTTGGAGAGTATATAAGCAGGAGGGGGTTCCCCAGTGTGGGGGTGGAAAA
ATTTTCAAAGGATCCAAGACACATCGGAGTTGGAGTAAATGAAATGACGCACATGCGTTTTGTGGGTTATCAAAAATATA
TGTCCAACAATATAAGGTTAGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACAGCCGG
GGTCTATGTAATCTATCGCTACGATCAATACAATTCGGCGCATCACCAGTCCTCCACAACAACCGGTGGGTCGATATCAC
GCCATTACCTGGAGCATTCATCATCAATATAGGCGATCTCATGCAGGTACCTGTTGACGAAAAAATCAAACACACCGGCC
TAGGAGATCTTCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis