Browse Element(s) Details


OsAffx.25954.1.S1_at

Description tigr:9632.m00901
TID=OsAffx.25954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1029010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10250OsAffx.14731.1.S1_at11/114+5514966..5518273hypothetical protein
LOC_Os04g10250OsAffx.14731.2.S1_at2/114+5514966..5518273hypothetical protein
LOC_Os04g10260OsAffx.25953.1.S1_at11/114+5519583..5525480hypothetical protein
LOC_Os04g10270Os.31312.5.S1_x_at5/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10270Os.31312.2.S1_x_at4/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_x_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10290OsAffx.25954.1.S1_at10/114+5539079..5541212hypothetical protein
LOC_Os04g10300OsAffx.30349.1.S1_at11/114+5543179..5545562hypothetical protein
LOC_Os04g10300Os.20851.1.A1_x_at1/114+5543179..5545562hypothetical protein
LOC_Os04g10310OsAffx.13745.1.S1_at11/114+5546820..5550446hypothetical protein
LOC_Os04g10320OsAffx.25956.1.S1_at11/114+5550751..5553477hypothetical protein
LOC_Os04g10330NANA4+5557728..5558519hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25954.1.S1_at--318--9671Chr04:5541155..5541179 (25 bp)
TCACCGGCAGTATTCCGGCAGGTCA
LOC_Os04g10290
OsAffx.25954.1.S1_at--714--5732Chr04:5570868..5570892 (25 bp)
GACTGGTACAGGTCGAAGTTGCAGT
NONE
OsAffx.25954.1.S1_at--407--2811Chr04:5541052..5541076 (25 bp)
AAGTTGCAGTTGTACTTGGCGGCCC
LOC_Os04g10290
OsAffx.25954.1.S1_at--884--4531Chr04:5541031..5541055 (25 bp)
GCCCTCGCCGGGTCACGCGAGTAGA
LOC_Os04g10290
OsAffx.25954.1.S1_at--107--9691Chr04:5541019..5541043 (25 bp)
TCACGCGAGTAGAGCCGCGCCTTGT
LOC_Os04g10290
OsAffx.25954.1.S1_at--182--1751Chr04:5540475..5540984 (25 bp)
ACCTCCGCCGGATATTTTGCCACTT
LOC_Os04g10290
OsAffx.25954.1.S1_at--803--6791Chr04:5540444..5540468 (25 bp)
GTTTTAAGACCAGAATACCTCTGCT
LOC_Os04g10290
OsAffx.25954.1.S1_at--735--4351Chr04:5540435..5540459 (25 bp)
CCAGAATACCTCTGCTATGGACAGA
LOC_Os04g10290
OsAffx.25954.1.S1_at--1017--1051NONE
AGGTGGAGGTAGTTCCAGTCCTACA
NONE
OsAffx.25954.1.S1_at--653--10051Chr04:5539119..5539143 (25 bp)
TAGTTCCAGTCCTACACATGTGCAA
LOC_Os04g10290
OsAffx.25954.1.S1_at--111--7271Chr04:5539111..5539135 (25 bp)
GTCCTACACATGTGCAACTTGCTTT
LOC_Os04g10290
Target Sequence 
TCACCGGCAGTATTCCGGCAGGTCACCGGCGGGCGGCGGGTCGGGTGCCATACGGAGGTAGAGCATGTCGCGCCAGTTGG
CCGCCGGCGACTGGTACAGGTCGAAGTTGCAGTTGTACTTGGCGGCCCTCGCCGGGTCACGCGAGTAGAGCCGCGCCTTG
TCGCTGCCCTCGCTGCCGCGACCGCGGCGCCGGCCACCTCCGCCGGATATTTTGCCACTTTAAAAAGTTTTAAGACCAGA
ATACCTCTGCTATGGACAGAGAGGAATGTGAGCGCCTGGGAGAAGGCTGAGCTAGTGCTCGCCGGTGGCGGGCGGCGAGC
ACGCGGGGGCGGACTGCGATGTGCGGAGGAGGGTGGCGGCGCCGAAGGGGGAGGACGACTGGGCGACGAGGTGGAGGTAG
TTCCAGTCCTACACATGTGCAACTTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis