Browse Element(s) Details


OsAffx.13777.1.S1_at

Description tigr:9632.m01041
TID=OsAffx.13777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1167011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11630OsAffx.13774.1.S1_at9/114+6352612..6356438hypothetical protein
LOC_Os04g11630Os.27004.1.A1_at1/114+6352612..6356438hypothetical protein
LOC_Os04g11640OsAffx.25982.4.S1_at11/114+6358768..6362321Methyl-CpG binding domain containing protein
LOC_Os04g11660Os.54805.2.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11660Os.54805.1.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11670OsAffx.13777.1.S1_at11/114+6381228..6382217hypothetical protein
LOC_Os04g11680NANA4+6388809..6392130hypothetical protein
LOC_Os04g11690NANA4+6392947..6394740retrotransposon protein, putative, unclassified
LOC_Os04g11700NANA4+6396196..6397999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11710NANA4+6398425..6399290retrotransposon protein, putative, unclassified
LOC_Os04g11720OsAffx.8916.1.S1_x_at2/114+6400547..6403454retrotransposon protein, putative, unclassified
LOC_Os04g11720OsAffx.13772.1.S1_at1/114+6400547..6403454retrotransposon protein, putative, unclassified
LOC_Os04g11730OsAffx.25982.3.S1_at10/114+6404815..6409299hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13777.1.S1_at--172--7691Chr04:6381724..6381748 (25 bp)
GGGTTTCTCTTGACGTACAAGCCAA
LOC_Os04g11670
OsAffx.13777.1.S1_at--252--5771Chr04:6381735..6381759 (25 bp)
GACGTACAAGCCAAGATCCATGCCT
LOC_Os04g11670
OsAffx.13777.1.S1_at--360--2211Chr04:6381740..6381764 (25 bp)
ACAAGCCAAGATCCATGCCTGCAAA
LOC_Os04g11670
OsAffx.13777.1.S1_at--789--9511Chr04:6381904..6381928 (25 bp)
TCTCTTCTAGAGATGCGGACAGGGA
LOC_Os04g11670
OsAffx.13777.1.S1_at--513--2591Chr04:6381928..6381952 (25 bp)
AACGAGGAGCGACAGCTACCTCAGA
LOC_Os04g11670
OsAffx.13777.1.S1_at--19--5891Chr04:6381934..6381958 (25 bp)
GAGCGACAGCTACCTCAGATCGATT
LOC_Os04g11670
OsAffx.13777.1.S1_at--171--1671Chr04:6381988..6382012 (25 bp)
AGCCGTTTGTTCTACACTTGCTCGA
LOC_Os04g11670
OsAffx.13777.1.S1_at--239--3371Chr04:6382039..6382063 (25 bp)
CACCACACGATGTATTCGCTATCGA
LOC_Os04g11670
OsAffx.13777.1.S1_at--978--1871Chr04:6382045..6382069 (25 bp)
ACGATGTATTCGCTATCGATGGGAC
LOC_Os04g11670
OsAffx.13777.1.S1_at--1089--6251Chr04:6382062..6382086 (25 bp)
GATGGGACCAGCACATCTGCGTGCG
LOC_Os04g11670
OsAffx.13777.1.S1_at--847--471Chr04:6382076..6382100 (25 bp)
ATCTGCGTGCGCTAACGCAGAAGCG
LOC_Os04g11670
Target Sequence 
GGGTTTCTCTTGACGTACAAGCCAAGATCCATGCCTGCAAAGAGCGTGGAATTCAACGTACTTCTCCAACCCGTGATGTC
TATTGTCCTATCCATAAGACGAAGAATCACGACCTTTCAAGCTGCAAGGTTCTTCTCAGCACCATGAGGACGCCACCTCC
TAGGGTCCAGCAGTCACAAATCTCTTCTAGAGATGCGGACAGGGAACGAGGAGCGACAGCTACCTCAGATCGATTCGTTG
GACTAATCGACATCGATCCTCACGAGCCGTTTGTTCTACACTTGCTCGAAGACCAGGCCTCATCGTCAACGAGTACACCA
CACGATGTATTCGCTATCGATGGGACCAGCACATCTGCGTGCGCTAACGCAGAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis