Browse Element(s) Details


Os.54805.2.S1_at

Description gb:AK107044.1
DB_XREF= gi:32992253
TID=Os.54805.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C07, full insert sequence.
FL= gb:AK107044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1166011/11F-box protein interaction domain containing protein, expressed
LOC_Os08g375201/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11620Os.1709.1.S1_x_at7/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.17546.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.31497.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620OsAffx.10148.1.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11630OsAffx.13774.1.S1_at9/114+6352612..6356438hypothetical protein
LOC_Os04g11630Os.27004.1.A1_at1/114+6352612..6356438hypothetical protein
LOC_Os04g11640OsAffx.25982.4.S1_at11/114+6358768..6362321Methyl-CpG binding domain containing protein
LOC_Os04g11660Os.54805.2.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11660Os.54805.1.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11670OsAffx.13777.1.S1_at11/114+6381228..6382217hypothetical protein
LOC_Os04g11680NANA4+6388809..6392130hypothetical protein
LOC_Os04g11690NANA4+6392947..6394740retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54805.2.S1_at--9--4851Chr04:6367589..6367613 (25 bp)
GCTAAGTGTTATTTCGCTGCATGAA
LOC_Os04g11660
Os.54805.2.S1_at--853--4751Chr04:6367574..6367598 (25 bp)
GCTGCATGAATTTTTGTTGTATCTC
LOC_Os04g11660
Os.54805.2.S1_at--46--6652Chr08:23629655..23629724 (24 bp)
GTTGTATCTCAGTTTCTATAATGCA
LOC_Os08g37520
Os.54805.2.S1_at--963--2531Chr04:6367518..6367542 (25 bp)
AACTCTATAATTGCCATTTCAGGAC
LOC_Os04g11660
Os.54805.2.S1_at--291--3492Chr04:6367499..6367523 (25 bp)
CAGGACATGTTGATAGTCTTCTTTT
LOC_Os04g11660
Os.54805.2.S1_at--993--331Chr04:6367435..6367459 (25 bp)
ATACAGCTCATATAGTTTCATCGAC
LOC_Os04g11660
Os.54805.2.S1_at--714--6832Chr04:6367421..6367445 (25 bp)
GTTTCATCGACATAATTCTGGAAGC
LOC_Os04g11660
Os.54805.2.S1_at--596--10612Chr04:6367406..6367430 (25 bp)
TTCTGGAAGCCATCTGGAACTGTAA
LOC_Os04g11660
Os.54805.2.S1_at--169--9471Chr04:6367362..6367386 (25 bp)
TCTGGTCATGCTGTTTACTCGGTCA
LOC_Os04g11660
Os.54805.2.S1_at--376--6832Chr04:6367350..6367374 (25 bp)
GTTTACTCGGTCAGAAAGTGCTCTA
LOC_Os04g11660
Os.54805.2.S1_at--847--5571Chr04:6367337..6367361 (25 bp)
GAAAGTGCTCTAATGCTCTACAGAA
LOC_Os04g11660
Target Sequence 
GCTAAGTGTTATTTCGCTGCATGAATTTTTGTTGTATCTCATTTTTGTTGTATCTCAGTTTCTATAATGCAAACTCTATA
ATTGCCATTTCAGGACATGTTGATAGTCTTCTTTTAATGATCTGACAAATACTTTGATTGATTAGCGATGAATAATACAG
CTCATATAGTTTCATCGACATAATTCTGGAAGCCATCTGGAACTGTAATATTGTGTACATAGTATTATCTGGTCATGCTG
TTTACTCGGTCAGAAAGTGCTCTAATGCTCTACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54805.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis