Browse Element(s) Details


OsAffx.10148.1.S1_x_at

Description gb:NM_186987.1
DB_XREF= gi:34901059
TID=OsAffx.10148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN (P0483E06.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g116201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11560OsAffx.14826.2.S1_at2/114+6317235..6318287Transposable element protein, putative, Retrotrans_gag
LOC_Os04g11560OsAffx.25476.2.S1_at1/114+6317235..6318287Transposable element protein, putative, Retrotrans_gag
LOC_Os04g11570OsAffx.25984.1.S1_at10/114+6320150..6321170hypothetical protein
LOC_Os04g11570OsAffx.25984.1.S1_x_at10/114+6320150..6321170hypothetical protein
LOC_Os04g11580Os.45976.1.S1_at5/114+6325076..6325974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11580Os.45976.1.S1_x_at4/114+6325076..6325974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11590OsAffx.940.1.S1_x_at1/114+6326563..6328265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11600Os.17546.2.S1_x_at1/114+6330588..6332232transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11610NANA4+6332806..6335591hypothetical protein
LOC_Os04g11620Os.1709.1.S1_x_at7/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.17546.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.31497.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620OsAffx.10148.1.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11630OsAffx.13774.1.S1_at9/114+6352612..6356438hypothetical protein
LOC_Os04g11630Os.27004.1.A1_at1/114+6352612..6356438hypothetical protein
LOC_Os04g11640OsAffx.25982.4.S1_at11/114+6358768..6362321Methyl-CpG binding domain containing protein
LOC_Os04g11660Os.54805.2.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11660Os.54805.1.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10148.1.S1_x_at--413--4333Chr12:7716834..7716857 (24 bp)
CCATTTGACAACAGCTGGCGCCGTC
NONE
OsAffx.10148.1.S1_x_at--324--216Chr12:7716835..7716859 (25 bp)
ATTTGACAACAGCTGGCGCCGTCCG
NONE
OsAffx.10148.1.S1_x_at--1065--10733Chr12:7716837..7716861 (25 bp)
TTGACAACAGCTGGCGCCGTCCGTG
NONE
OsAffx.10148.1.S1_x_at--225--8951Chr07:9357073..9357097 (25 bp)
TGAAAAGGGAGCCTTTTCGCCACAC
NONE
OsAffx.10148.1.S1_x_at--1091--2311Chr07:9357076..9357100 (25 bp)
AAAGGGAGCCTTTTCGCCACACCAT
NONE
OsAffx.10148.1.S1_x_at--132--2891Chr07:9357077..9357101 (25 bp)
AAGGGAGCCTTTTCGCCACACCATG
NONE
OsAffx.10148.1.S1_x_at--219--1071Chr07:9357078..9357102 (25 bp)
AGGGAGCCTTTTCGCCACACCATGC
NONE
OsAffx.10148.1.S1_x_at--256--1651Chr07:9357082..9357106 (25 bp)
AGCCTTTTCGCCACACCATGCCCTT
NONE
OsAffx.10148.1.S1_x_at--942--352Chr07:9357099..9357123 (25 bp)
ATGCCCTTCGCCACAATACCAAAAA
NONE
OsAffx.10148.1.S1_x_at--1110--9152Chr07:9357100..9357124 (25 bp)
TGCCCTTCGCCACAATACCAAAAAG
NONE
OsAffx.10148.1.S1_x_at--52--4592Chr07:9357146..9357170 (25 bp)
GCGAAAAGGTTTCGCCACACCCAAG
NONE
Target Sequence 
CCATTTGACAACAGCTGGCGCCGTCCGTGGGGAACCCAGACCAAAAGGGTGAAAAGGGAGCCTTTTCGCCACACCATGCC
CTTCGCCACAATACCAAAAAGGTACGGCGTCAAGGGCTGGGGGCGAAAAGGTTTCGCCACACCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10148.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis