Browse Element(s) Details


OsAffx.25984.1.S1_x_at

Description tigr:9632.m01032
TID=OsAffx.25984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1157010/11hypothetical protein
LOC_Os05g164101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11530OsAffx.25982.2.S1_at10/114+6294745..6300267Methyl-CpG binding domain containing protein
LOC_Os04g11530OsAffx.25982.3.S1_at1/114+6294745..6300267Methyl-CpG binding domain containing protein
LOC_Os04g11540NANA4+6302127..6304062retrotransposon protein, putative, unclassified
LOC_Os04g11550NANA4+6305862..6307419retrotransposon protein, putative, unclassified
LOC_Os04g11560OsAffx.14826.2.S1_at2/114+6317235..6318287Transposable element protein, putative, Retrotrans_gag
LOC_Os04g11560OsAffx.25476.2.S1_at1/114+6317235..6318287Transposable element protein, putative, Retrotrans_gag
LOC_Os04g11570OsAffx.25984.1.S1_at10/114+6320150..6321170hypothetical protein
LOC_Os04g11570OsAffx.25984.1.S1_x_at10/114+6320150..6321170hypothetical protein
LOC_Os04g11580Os.45976.1.S1_at5/114+6325076..6325974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11580Os.45976.1.S1_x_at4/114+6325076..6325974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11590OsAffx.940.1.S1_x_at1/114+6326563..6328265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11600Os.17546.2.S1_x_at1/114+6330588..6332232transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11610NANA4+6332806..6335591hypothetical protein
LOC_Os04g11620Os.1709.1.S1_x_at7/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.17546.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.31497.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620OsAffx.10148.1.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25984.1.S1_x_at--287--4311Chr04:6320180..6320204 (25 bp)
CCTTCGTCTAGAATGTACAGTCTTT
LOC_Os04g11570
OsAffx.25984.1.S1_x_at--109--10031Chr04:6320188..6320212 (25 bp)
TAGAATGTACAGTCTTTGCCATGGG
LOC_Os04g11570
OsAffx.25984.1.S1_x_at--653--9171Chr04:6320224..6320248 (25 bp)
TGCCGTCCTCACTCCATTGTCTTTG
LOC_Os04g11570
OsAffx.25984.1.S1_x_at--301--51Chr04:6320239..6320263 (25 bp)
ATTGTCTTTGCCATGTGGCTTCGGC
LOC_Os04g11570
OsAffx.25984.1.S1_x_at--178--8971Chr04:6320290..6320314 (25 bp)
TGAACTTAACACCTTAAACCTGAAT
LOC_Os04g11570
OsAffx.25984.1.S1_x_at--689--2375Chr12:2084180..2084200 (21 bp)
AAACCTGAATCCTGACTGGTCGCAT
NONE
OsAffx.25984.1.S1_x_at--320--3855Chr12:2084181..2084536 (25 bp)
CTGAATCCTGACTGGTCGCATGGTT
NONE
OsAffx.25984.1.S1_x_at--196--3511NONE
CATGGTTTCGGCAGATGGTTTGAAG
NONE
OsAffx.25984.1.S1_x_at--44--6831Chr04:6320331..6320643 (25 bp)
GTTTCGGCAGATGGTTTGAAGTTTG
LOC_Os04g11570
OsAffx.25984.1.S1_x_at--1093--8991Chr04:6320635..6320659 (25 bp)
TGAAGTTTGGATAGTTGTGCTCATG
LOC_Os04g11570
OsAffx.25984.1.S1_x_at--948--2093Chr04:6321083..6321107 (25 bp)
ACATCCGTCATGCGACAAAATGGAC
LOC_Os04g11570
Target Sequence 
CCTTCGTCTAGAATGTACAGTCTTTGCCATGGGGGTCCATCTCTTGCCGTCCTCACTCCATTGTCTTTGCCATGTGGCTT
CGGCGTCTTCGCTGTGGGGCTTCGCCCCGTTGAACTTAACACCTTAAACCTGAATCCTGACTGGTCGCATGGTTTCGGCA
GATGGTTTGAAGTTTGGATAGTTGTGCTCATGGCAATTAAGGACCGGTATTTTGAGGAGAAAACACATCCGTCATGCGAC
AAAATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25984.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis