Browse Element(s) Details


OsAffx.13819.1.S1_at

Description tigr:9632.m01342
TID=OsAffx.13819.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1464010/11hypothetical protein
LOC_Os04g145801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g294691/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14580OsAffx.31892.2.S1_x_at2/114+8155597..8165821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14580Os.17546.2.S1_x_at1/114+8155597..8165821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14580OsAffx.13819.1.S1_at1/114+8155597..8165821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14590NANA4+8166106..8169544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14600NANA4+8171066..8173392hypothetical protein
LOC_Os04g14610Os.23638.1.A1_x_at1/114+8175251..8177699retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14620NANA4+8177988..8182378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14630NANA4+8185075..8185356hypothetical protein
LOC_Os04g14640OsAffx.13819.1.S1_at10/114+8185978..8187567hypothetical protein
LOC_Os04g14640Os.17546.2.S1_x_at1/114+8185978..8187567hypothetical protein
LOC_Os04g14654Os.52443.1.S1_at11/114+8196368..8213126Vacuolar protein-sorting protein 33 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13819.1.S1_at--858--60310Chr10:7148763..7148783 (21 bp)
GAGATCGTGCGAGTACCTTGTCAAG
NONE
OsAffx.13819.1.S1_at--680--9711NONE
TCAAGCCCAGGGACCACACAATGGA
NONE
OsAffx.13819.1.S1_at--463--2191Chr04:8187158..8187182 (25 bp)
ACACAATGGAGTTTGCGCTCGGCGC
LOC_Os04g14640
OsAffx.13819.1.S1_at--375--5711Chr04:8187192..8187216 (25 bp)
GACTCAGGCTCCCAATTTCAAATCT
LOC_Os04g14640
OsAffx.13819.1.S1_at--145--2271Chr04:8187211..8187235 (25 bp)
AAATCTTCCCACTGCAAGCTGTTGA
LOC_Os04g14640
OsAffx.13819.1.S1_at--300--2691Chr04:8187226..8187250 (25 bp)
AAGCTGTTGAAGTTCACCTCAGAGG
LOC_Os04g14640
OsAffx.13819.1.S1_at--165--4291Chr04:8187242..8187266 (25 bp)
CCTCAGAGGAGGGTAGTTCGGCATT
LOC_Os04g14640
OsAffx.13819.1.S1_at--987--6711Chr04:8187257..8187281 (25 bp)
GTTCGGCATTCTTCCTATGGAGAAG
LOC_Os04g14640
OsAffx.13819.1.S1_at--208--10111Chr04:8187272..8187296 (25 bp)
TATGGAGAAGCGACTGCTCTTTCCT
LOC_Os04g14640
OsAffx.13819.1.S1_at--621--9651Chr04:8187296..8187320 (25 bp)
TCAGTTCCTCACAGCTTGGCATCAT
LOC_Os04g14640
OsAffx.13819.1.S1_at--1076--2931Chr04:8187377..8187401 (25 bp)
AAGGCGACCGGATCAGGAACACCGA
LOC_Os04g14640
Target Sequence 
GAGATCGTGCGAGTACCTTGTCAAGCCAGAGGCCTCTTGGGCGAAGGGTGCAAGGCGAAGAGTATATACCGGAGGAAGAT
GACTTCGCCACAGCAAGTTCGCCCCCGCGAGTGCCGAAGAAGCCTTTCCGACCCATCAAGCCCAGGGACCACACAATGGA
GTTTGCGCTCGGCGCTCCTACTCTGACTCAGGCTCCCAATTTCAAATCTTCCCACTGCAAGCTGTTGAAGTTCACCTCAG
AGGAGGGTAGTTCGGCATTCTTCCTATGGAGAAGCGACTGCTCTTTCCTCAGTTCCTCACAGCTTGGCATCATCGTCGCA
CAAGACTCCTCGCGGCGAGGAAAGGCGAACAGATCTTGGCTGAAGAGCAAAGGCGACCGGATCAGGAACACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis