Browse Element(s) Details


OsAffx.13922.1.S1_at

Description tigr:9632.m02071
TID=OsAffx.13922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2241011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22390Os.49284.1.S1_x_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22390Os.27645.1.S1_x_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22390Os.49284.1.S1_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22400NANA4+12660764..12666779retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22410OsAffx.13922.1.S1_at11/114+12669773..12670468hypothetical protein
LOC_Os04g22420NANA4+12672349..12673107retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22430Os.35046.2.S1_x_at1/114+12673522..12676614retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22440OsAffx.13923.2.S1_at11/114+12683141..12683689hypothetical protein
LOC_Os04g22450OsAffx.26097.1.S1_at11/114+12686482..12686847hypothetical protein
LOC_Os04g22460OsAffx.31579.1.S1_at2/114+12688491..12690263retrotransposon protein, putative, unclassified
LOC_Os04g22470OsAffx.26937.5.S1_at11/114+12693329..12701830Leucine Rich Repeat family protein
LOC_Os04g22470OsAffx.26937.4.S1_x_at1/114+12693329..12701830Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13922.1.S1_at--1091--3451Chr04:12670414..12670438 (25 bp)
CAGGAAAAGCCACCGGTAGCGAAGC
LOC_Os04g22410
OsAffx.13922.1.S1_at--495--5511Chr04:12670411..12670435 (25 bp)
GAAAAGCCACCGGTAGCGAAGCCGG
LOC_Os04g22410
OsAffx.13922.1.S1_at--527--1771Chr04:12670403..12670427 (25 bp)
ACCGGTAGCGAAGCCGGTGTCAACG
LOC_Os04g22410
OsAffx.13922.1.S1_at--1135--2191Chr04:12669838..12669862 (25 bp)
ACAACAGAGTGGAGGGCGTCCGACA
LOC_Os04g22410
OsAffx.13922.1.S1_at--156--1331Chr04:12669833..12669857 (25 bp)
AGAGTGGAGGGCGTCCGACATTCCA
LOC_Os04g22410
OsAffx.13922.1.S1_at--474--8551Chr04:12669829..12669853 (25 bp)
TGGAGGGCGTCCGACATTCCAGTCA
LOC_Os04g22410
OsAffx.13922.1.S1_at--249--6131Chr04:12669827..12669851 (25 bp)
GAGGGCGTCCGACATTCCAGTCAGA
LOC_Os04g22410
OsAffx.13922.1.S1_at--520--8371Chr04:12669824..12669848 (25 bp)
GGCGTCCGACATTCCAGTCAGAGAA
LOC_Os04g22410
OsAffx.13922.1.S1_at--256--7251Chr04:12669821..12669845 (25 bp)
GTCCGACATTCCAGTCAGAGAAGCC
LOC_Os04g22410
OsAffx.13922.1.S1_at--967--5671Chr04:12669817..12669841 (25 bp)
GACATTCCAGTCAGAGAAGCCGATG
LOC_Os04g22410
OsAffx.13922.1.S1_at--31--9231Chr04:12669812..12669836 (25 bp)
TCCAGTCAGAGAAGCCGATGGGAAT
LOC_Os04g22410
Target Sequence 
CAGGAAAAGCCACCGGTAGCGAAGCCGGTGTCAACGAGGTCCGCGGGGAAGGCGGTGGATCCAAGAGGAGAAGGTGGGGG
AAGAGAGGTTGAGGACAATGGGGCCAGCAGCGCGACAACAGAGTGGAGGGCGTCCGACATTCCAGTCAGAGAAGCCGATG
GGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis