Browse Element(s) Details


OsAffx.13935.1.S1_at

Description tigr:9632.m02147
TID=OsAffx.13935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2315010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23109NANA4+13113156..13114003NA
LOC_Os04g23120OsAffx.13934.1.S1_at11/114+13115131..13116702hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_x_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23140Os.27641.1.A1_at11/114+13129401..13130778expressed protein
LOC_Os04g23140OsAffx.3864.1.S1_x_at11/114+13129401..13130778expressed protein
LOC_Os04g23150OsAffx.13935.1.S1_at10/114+13137807..13138793hypothetical protein
LOC_Os04g23170NANA4+13149471..13149941hypothetical protein
LOC_Os04g23180Os.12031.1.A1_at6/114+13152221..13159250cation efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13935.1.S1_at--647--3651Chr04:13138735..13138759 (25 bp)
CTTACACCCTATCTGTTCCATATAC
LOC_Os04g23150
OsAffx.13935.1.S1_at--61--4191Chr04:13138729..13138753 (25 bp)
CCCTATCTGTTCCATATACCGTGAT
LOC_Os04g23150
OsAffx.13935.1.S1_at--37--1792Chr04:13138399..13138736 (25 bp)
ACCGTGATAGAAGAACCAAGCTGCT
LOC_Os04g23150
OsAffx.13935.1.S1_at--153--3251NONE
CAAGCTGCTGCAAGGGATTTTCTCT
NONE
OsAffx.13935.1.S1_at--684--4771Chr04:13138024..13138048 (25 bp)
GCTGCTGCAAGGGATTTTCTCTCAA
LOC_Os04g23150
OsAffx.13935.1.S1_at--986--4751Chr04:13138021..13138045 (25 bp)
GCTGCAAGGGATTTTCTCTCAATAA
LOC_Os04g23150
OsAffx.13935.1.S1_at--286--2891Chr04:13138017..13138041 (25 bp)
CAAGGGATTTTCTCTCAATAAAGGC
LOC_Os04g23150
OsAffx.13935.1.S1_at--333--2312Chr04:13137998..13138022 (25 bp)
AAAGGCCTGATATGCCTACCATGCG
LOC_Os04g23150
OsAffx.13935.1.S1_at--53--3871Chr04:13137992..13138016 (25 bp)
CTGATATGCCTACCATGCGTGTTAA
LOC_Os04g23150
OsAffx.13935.1.S1_at--321--9171Chr04:13137986..13138010 (25 bp)
TGCCTACCATGCGTGTTAAACAAGT
LOC_Os04g23150
OsAffx.13935.1.S1_at--759--9031Chr04:13137977..13138001 (25 bp)
TGCGTGTTAAACAAGTTCCAGAATA
LOC_Os04g23150
Target Sequence
CTTACACCCTATCTGTTCCATATACCGTGATAGAAGAACCAAGCTGCTGCAAGGGATTTTCTCTCAATAAAGGCCTGATA
TGCCTACCATGCGTGTTAAACAAGTTCCAGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis