Browse Element(s) Details


OsAffx.13963.1.S1_at

Description tigr:9632.m02320
TID=OsAffx.13963.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2584011/11F-box domain containing protein
LOC_Os04g2482011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25830OsAffx.26149.1.S1_at10/114+14981110..14983432hypothetical protein
LOC_Os04g25840OsAffx.13963.1.S1_at11/114+15000713..15002308F-box domain containing protein
LOC_Os04g25850OsAffx.23529.1.S1_at1/114+15006094..15007023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25860OsAffx.26150.1.S1_at7/114+15007913..15009034hypothetical protein
LOC_Os04g25860OsAffx.1293.1.S1_x_at1/114+15007913..15009034hypothetical protein
LOC_Os04g25870OsAffx.26219.1.S1_at4/114+15011029..15011658SRF-type transcription factor family protein
LOC_Os04g25870OsAffx.26219.1.S1_x_at3/114+15011029..15011658SRF-type transcription factor family protein
LOC_Os04g25880NANA4+15017845..15019992hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13963.1.S1_at--585--5632Chr04:15001757..15001781 (25 bp)
GACACGTTCTGCGTGCGCGAGGCGT
LOC_Os04g25840
OsAffx.13963.1.S1_at--891--7712Chr04:15001812..15001836 (25 bp)
GGTGGACCGGCCGTGTCGCGGTGAT
LOC_Os04g25840
OsAffx.13963.1.S1_at--510--9452Chr04:15001884..15001908 (25 bp)
TCGGCGTCGTGATCTACGTGCACCT
LOC_Os04g25840
OsAffx.13963.1.S1_at--64--8372Chr04:15001886..15001910 (25 bp)
GGCGTCGTGATCTACGTGCACCTGC
LOC_Os04g25840
OsAffx.13963.1.S1_at--515--5372Chr04:15001924..15001948 (25 bp)
GAAGAAGGTCTACGAGAGGAAACTC
LOC_Os04g25840
OsAffx.13963.1.S1_at--257--2632Chr04:15002052..15002076 (25 bp)
AACCACGACAGAATTGCTGCGTCAG
LOC_Os04g25840
OsAffx.13963.1.S1_at--132--1432Chr04:15002061..15002085 (25 bp)
AGAATTGCTGCGTCAGAAGCCCGGA
LOC_Os04g25840
OsAffx.13963.1.S1_at--1128--3152Chr04:15002063..15002087 (25 bp)
AATTGCTGCGTCAGAAGCCCGGACG
LOC_Os04g25840
OsAffx.13963.1.S1_at--818--4752Chr04:15002067..15002091 (25 bp)
GCTGCGTCAGAAGCCCGGACGGTCT
LOC_Os04g25840
OsAffx.13963.1.S1_at--178--812Chr04:15002237..15002261 (25 bp)
ATGGTGGCCCAGCTCGCTGAATGGG
LOC_Os04g25840
OsAffx.13963.1.S1_at--1016--3392Chr04:15002246..15002270 (25 bp)
CAGCTCGCTGAATGGGCCGCGCAGC
LOC_Os04g25840
Target Sequence 
GACACGTTCTGCGTGCGCGAGGCGTGCGAGCGGNTCGAGTGGCTTCCCGACGGCTGGTGGACCGGCCGTGTCGCGGTGAT
CGCCGTCGGCGACAACGCCGAGTTCGCGCTGCTGGACTTGGAGAANGTCGGCGTCGTGATCTACGTGCACCTGCNGTGGA
GGACGGTGAAGAAGGTCTACGAGAGGAAACTCNCCGACGCCGACGATGGCGGCGGCGGCGGCGGTGACCGCCAGCNGCCG
GTGAGGGTGTTCCCGNTGACGACNGTCTGGCCGCCNACGTTCCCGGNGTTGGACAAACCACGACAGAATTGCTGCGTCAG
AAGCCCGGACGGTCTCGTCNGAGNCNTGGTGATGACGTGCCACGCCGGCTGGTCGGCGACGTCGCCGTCGTGCTCNCGCC
GGGATGGGGANNANNNNNNNGACGACGACGAGGACGTCGGAGNNNTGCTCCCGGGCTGTTCGTGGGCCGGATGGTTCGAT
NACATGGNNGCNATGGTGGCCCAGCTCGCTGAATGGGCCGCGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis