Browse Element(s) Details


OsAffx.13978.1.S1_x_at

Description tigr:9632.m02446
TID=OsAffx.13978.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2605010/11hypothetical protein
LOC_Os04g253503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26000Os.47463.1.S1_x_at5/114+15106115..15109815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26000Os.14491.2.S1_x_at4/114+15106115..15109815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26010Os.46053.2.S1_x_at9/114+15111895..15115097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26020NANA4+15115925..15116563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26030Os.40855.4.S1_x_at6/114+15117017..15121400hypothetical protein
LOC_Os04g26030Os.40855.2.S1_x_at4/114+15117017..15121400hypothetical protein
LOC_Os04g26030Os.40855.4.S1_at1/114+15117017..15121400hypothetical protein
LOC_Os04g26030Os.40360.1.S1_x_at1/114+15117017..15121400hypothetical protein
LOC_Os04g26040NANA4+15123934..15126681transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26050OsAffx.13978.1.S1_at10/114+15128724..15129068hypothetical protein
LOC_Os04g26050OsAffx.13978.1.S1_x_at10/114+15128724..15129068hypothetical protein
LOC_Os04g26060NANA4+15131598..15134930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26070Os.47463.1.S1_x_at6/114+15138136..15141797transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26070Os.14491.2.S1_x_at4/114+15138136..15141797transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26080OsAffx.3899.1.S1_at11/114+15142461..15144494hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13978.1.S1_x_at--80--8851Chr04:15129001..15129025 (25 bp)
TGATCAGCGTCGGTGCCAAGGCCAA
LOC_Os04g26050
OsAffx.13978.1.S1_x_at--725--2911Chr04:15128978..15129002 (25 bp)
AAGGAGCAGCACAACGCGGTGGCCA
LOC_Os04g26050
OsAffx.13978.1.S1_x_at--1158--9591Chr04:15128939..15128963 (25 bp)
TCATCGAATAACTCGGACGCATCCT
LOC_Os04g26050
OsAffx.13978.1.S1_x_at--963--5231Chr04:15128934..15128958 (25 bp)
GAATAACTCGGACGCATCCTGGAGG
LOC_Os04g26050
OsAffx.13978.1.S1_x_at--437--9811Chr04:15128931..15128955 (25 bp)
TAACTCGGACGCATCCTGGAGGCGA
LOC_Os04g26050
OsAffx.13978.1.S1_x_at--145--2011Chr04:15128929..15128953 (25 bp)
ACTCGGACGCATCCTGGAGGCGATC
LOC_Os04g26050
OsAffx.13978.1.S1_x_at--260--4051Chr04:15128909..15128933 (25 bp)
CGATCAAGACGCTGGTCCAGCTCAT
LOC_Os04g26050
OsAffx.13978.1.S1_x_at--1025--1811Chr04:15128870..15128894 (25 bp)
ACCCACAGCCAGAAGAACGCCATGG
LOC_Os04g26050
OsAffx.13978.1.S1_x_at--917--4652Chr04:14643081..14643105 (25 bp)
GCGGGCGCCGTGTTAGCCCTCACGA
LOC_Os04g25350
OsAffx.13978.1.S1_x_at--585--7412Chr04:14643090..14643114 (25 bp)
GTGTTAGCCCTCACGACCTTGCTCT
LOC_Os04g25350
OsAffx.13978.1.S1_x_at--298--1491Chr04:14643172..14643196 (25 bp)
AGCAAACATCAGGCGCCATGGCCGT
LOC_Os04g25350
Target Sequence 
TGATCAGCGTCGGTGCCAAGGCCAAGGAGCAGCACAACGCGGTGGCCATCCTCTTCTACCTCTCATCGAATAACTCGGAC
GCATCCTGGAGGCGATCAAGACGCTGGTCCAGCTCATCTGGGACGGCGCACACCCACAGCCAGAAGAACGCCATGGTCAT
CCTGTACNNGNTNNNCCNNNNCGNGNNNNNCCAGAGCACGGCCATCGCCGCGGGCGCCGTGTTAGCCCTCACGACCTTGC
TCTCCAACGACCGCGNCGACCTCGCCCAGGACAGCATCGTGNTGCTGGCGAGGAAAGCCNAGCAAACATCAGGCGCCATG
GCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13978.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis