Browse Element(s) Details


OsAffx.13992.1.S1_at

Description tigr:9632.m02549
TID=OsAffx.13992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2709011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27034NANA4+15807332..15810057hypothetical protein
LOC_Os04g27050OsAffx.26178.1.S1_at10/114+15812040..15812583hypothetical protein
LOC_Os04g27060Os.11266.1.S1_at11/114+15814091..15817930Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g27070OsAffx.3914.1.S1_at10/114+15819887..15824535Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27080OsAffx.26179.1.S1_at10/114+15826757..15827920hypothetical protein
LOC_Os04g27090OsAffx.13992.1.S1_at11/114+15830085..15830327hypothetical protein
LOC_Os04g27100OsAffx.13993.1.S1_at11/114+15834460..15836334WRKY transcription factor 19, putative
LOC_Os04g27110NANA4+15838404..15840837retrotransposon protein, putative, unclassified
LOC_Os04g27120OsAffx.20387.1.S1_x_at1/114+15841817..15844811transposon protein, putative, unclassified
LOC_Os04g27130NANA4+15845197..15847989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27140NANA4+15851563..15853448retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13992.1.S1_at--744--7291Chr04:15830259..15830283 (25 bp)
GTGCGCGACGCGACGGATCAAAAAG
LOC_Os04g27090
OsAffx.13992.1.S1_at--911--2731Chr04:15830237..15830261 (25 bp)
AAGAAGGCGGCGGAAACCAGCTCCT
LOC_Os04g27090
OsAffx.13992.1.S1_at--486--8351Chr04:15830229..15830253 (25 bp)
GGCGGAAACCAGCTCCTTCGACGAT
LOC_Os04g27090
OsAffx.13992.1.S1_at--341--3951Chr04:15830227..15830251 (25 bp)
CGGAAACCAGCTCCTTCGACGATGA
LOC_Os04g27090
OsAffx.13992.1.S1_at--145--1891Chr04:15830209..15830233 (25 bp)
ACGATGACGGGCAGCAGCACCCTAG
LOC_Os04g27090
OsAffx.13992.1.S1_at--215--691Chr04:15830206..15830230 (25 bp)
ATGACGGGCAGCAGCACCCTAGGCC
LOC_Os04g27090
OsAffx.13992.1.S1_at--1099--1791Chr04:15830191..15830215 (25 bp)
ACCCTAGGCCGCAGGGCGAGGTGGG
LOC_Os04g27090
OsAffx.13992.1.S1_at--3--3951Chr04:15830161..15830185 (25 bp)
CGGATCCCGGCGATTCAGTGAAGGA
LOC_Os04g27090
OsAffx.13992.1.S1_at--710--111Chr04:15830149..15830173 (25 bp)
ATTCAGTGAAGGAGGAGTCTTCGGA
LOC_Os04g27090
OsAffx.13992.1.S1_at--125--9571Chr04:15830132..15830156 (25 bp)
TCTTCGGAGCGAAGCGGACCAAGCG
LOC_Os04g27090
OsAffx.13992.1.S1_at--263--1651Chr04:15830125..15830149 (25 bp)
AGCGAAGCGGACCAAGCGGTTGTGG
LOC_Os04g27090
Target Sequence 
GTGCGCGACGCGACGGATCAAAAAGAAGGCGGCGGAAACCAGCTCCTTCGACGATGACGGGCAGCAGCACCCTAGGCCGC
AGGGCGAGGTGGGGGCGGCGGATCCCGGCGATTCAGTGAAGGAGGAGTCTTCGGAGCGAAGCGGACCAAGCGGTTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis