Browse Element(s) Details


OsAffx.3914.1.S1_at

Description tigr:9632.m02547
TID=OsAffx.3914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2707010/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27010OsAffx.26177.1.S1_at11/114+15795311..15795658hypothetical protein
LOC_Os04g27020OsAffx.13991.1.S1_at11/114+15799098..15802139Cytochrome P450 family protein
LOC_Os04g27034NANA4+15807332..15810057hypothetical protein
LOC_Os04g27050OsAffx.26178.1.S1_at10/114+15812040..15812583hypothetical protein
LOC_Os04g27060Os.11266.1.S1_at11/114+15814091..15817930Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g27070OsAffx.3914.1.S1_at10/114+15819887..15824535Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27080OsAffx.26179.1.S1_at10/114+15826757..15827920hypothetical protein
LOC_Os04g27090OsAffx.13992.1.S1_at11/114+15830085..15830327hypothetical protein
LOC_Os04g27100OsAffx.13993.1.S1_at11/114+15834460..15836334WRKY transcription factor 19, putative
LOC_Os04g27110NANA4+15838404..15840837retrotransposon protein, putative, unclassified
LOC_Os04g27120OsAffx.20387.1.S1_x_at1/114+15841817..15844811transposon protein, putative, unclassified
LOC_Os04g27130NANA4+15845197..15847989retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3914.1.S1_at--856--8511Chr04:15822356..15822380 (25 bp)
TGGAAGGAGCCGAATGGTCCCACCG
LOC_Os04g27070
OsAffx.3914.1.S1_at--1089--591Chr04:15822324..15822348 (25 bp)
ATGCCCAGCTTCAGCGAGCAGGTGG
LOC_Os04g27070
OsAffx.3914.1.S1_at--592--1531Chr04:15822308..15822332 (25 bp)
AGCAGGTGGCTCTGGCGACAATGAC
LOC_Os04g27070
OsAffx.3914.1.S1_at--288--2991Chr04:15822289..15822313 (25 bp)
AATGACCACAGGAACACGGCCGCTG
LOC_Os04g27070
OsAffx.3914.1.S1_at--121--1951Chr04:15822274..15822298 (25 bp)
ACGGCCGCTGGCTGCTGGTTTAATG
LOC_Os04g27070
OsAffx.3914.1.S1_at--983--9611Chr04:15822177..15822201 (25 bp)
TCATGCGGGAAAACTGGCCGTTTCA
LOC_Os04g27070
OsAffx.3914.1.S1_at--776--71NONE
ATTGCCGGATTTAAGCTCGGGTCGC
NONE
OsAffx.3914.1.S1_at--1047--2391Chr04:15820038..15820062 (25 bp)
AAACAACTAACCAGGCTCGCATTGA
LOC_Os04g27070
OsAffx.3914.1.S1_at--855--911Chr04:15820026..15820050 (25 bp)
AGGCTCGCATTGACCACCGTGATGT
LOC_Os04g27070
OsAffx.3914.1.S1_at--1041--7491Chr04:15819994..15820018 (25 bp)
GTGGTGCAGCGCCTTATCAATATAA
LOC_Os04g27070
OsAffx.3914.1.S1_at--307--831Chr04:15819933..15819957 (25 bp)
ATGGATTCACGTTCGGCGAGGGCAT
LOC_Os04g27070
Target Sequence 
TGGAAGGAGCCGAATGGTCCCACCGGAAGCACATGCCCAGCTTCAGCGAGCAGGTGGCTCTGGCGACAATGACCACAGGA
ACACGGCCGCTGGCTGCTGGTTTAATGGTTGGCATGAGTGAGTCCATGACAACGAAACAAGCGTACGAGTGGGCTGTGAA
TAGCACTGACGCCATCATCTCATGCGGGAAAACTGGCCGTTTCATGAACGACATTGCCGGATTTAAGCTCGGGTCGCAGA
ACAAAGCTGACATGCCATGTTCGGTTGAGAGTTACATCAACGAGCACAAGGTCACAGCCGATGTCGCCATCGCCAAGATT
AATGAATTGGTAGAAGATGAGTGGAAAACAACTAACCAGGCTCGCATTGACCACCGTGATGTGCTCCCTGTGGTGCAGCG
CCTTATCAATATAACCATGGCCATTCCATTGTATTACAGCGATGGAATTGATGGATTCACGTTCGGCGAGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis