Browse Element(s) Details


OsAffx.13991.1.S1_at

Description tigr:9632.m02542
TID=OsAffx.13991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2702011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26994NANA4+15781431..15781735hypothetical protein
LOC_Os04g27010OsAffx.26177.1.S1_at11/114+15795311..15795658hypothetical protein
LOC_Os04g27020OsAffx.13991.1.S1_at11/114+15799098..15802139Cytochrome P450 family protein
LOC_Os04g27034NANA4+15807332..15810057hypothetical protein
LOC_Os04g27050OsAffx.26178.1.S1_at10/114+15812040..15812583hypothetical protein
LOC_Os04g27060Os.11266.1.S1_at11/114+15814091..15817930Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g27070OsAffx.3914.1.S1_at10/114+15819887..15824535Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27080OsAffx.26179.1.S1_at10/114+15826757..15827920hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13991.1.S1_at--514--7091Chr04:15801545..15801569 (25 bp)
GTCAACAACACTAATATGGGCCATG
LOC_Os04g27020
OsAffx.13991.1.S1_at--414--1611Chr04:15801574..15801598 (25 bp)
AGCTGATCCGTTCCCCAAGAGTAAT
LOC_Os04g27020
OsAffx.13991.1.S1_at--897--6031Chr04:15801615..15801639 (25 bp)
GAGATGCGGCAAATCTTCGATGGAA
LOC_Os04g27020
OsAffx.13991.1.S1_at--470--5991Chr04:15801699..15801723 (25 bp)
GAGACCTTGAGACTGCATTGTCCAT
LOC_Os04g27020
OsAffx.13991.1.S1_at--133--1071Chr04:15801787..15801811 (25 bp)
AGGGTACATCTGCATTCGTGAATGT
LOC_Os04g27020
OsAffx.13991.1.S1_at--145--7991Chr04:15801845..15801869 (25 bp)
GGATGCCGAAGAATTCAAGCCAGAG
LOC_Os04g27020
OsAffx.13991.1.S1_at--157--8471Chr04:15801932..15801956 (25 bp)
TGGCCGCAGAGTATGCCCTGGAATA
LOC_Os04g27020
OsAffx.13991.1.S1_at--31--8152Chr10:16275417..16275708 (25 bp)
GGAATAAATCTTGGGCTAGCTAACA
NONE
OsAffx.13991.1.S1_at--467--10011Chr04:15801967..15801991 (25 bp)
TAGCTAACATGGAGTTTGCCTTGGC
LOC_Os04g27020
OsAffx.13991.1.S1_at--53--6211Chr04:15802059..15802083 (25 bp)
GAGGCACCTGGACTACTGGTTTATA
LOC_Os04g27020
OsAffx.13991.1.S1_at--976--3591Chr04:15802074..15802098 (25 bp)
CTGGTTTATAAACACACTAGCCTAA
LOC_Os04g27020
Target Sequence 
GTCAACAACACTAATATGGGCCATGGCAGAGCTGATCCGTTCCCCAAGAGTAATGGCAAAGGTGCAATCAGAGATGCGGC
AAATCTTCGATGGAAAAAACACCATCACTGAAGATGACCTTGTCCAACTGAGCTATCTCAAGATGGTAATAAAGGAGACC
TTGAGACTGCATTGTCCATTGCCCCTCTTAGCCCCTCGCAAATGCCGTGAGACATGTAAGATTATGGGCTATGATGTACC
CAAGGGTACATCTGCATTCGTGAATGTGTGGGCAATATGCAGGGATAGTAAGTATTGGGAGGATGCCGAAGAATTCAAGC
CAGAGAGGTTTGAAAACAACGATATAGAATTCAAAGGGAGCAACTTTGAGTTTCTCCCTTTCGGCTCTGGCCGCAGAGTA
TGCCCTGGAATAAATCTTGGGCTAGCTAACATGGAGTTTGCCTTGGCTAACCTTCTCTACCATTTTGATTGGAAGCTGCC
CAATGGAATGTTGCACAAGGATCTTGACATGAGGGAGGCACCTGGACTACTGGTTTATAAACACACTAGCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis