Browse Element(s) Details


Os.11266.1.S1_at

Description gb:AK103553.1
DB_XREF= gi:32988762
TID=Os.11266.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132F18, full insert sequence.
FL= gb:AK103553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2706011/11Auxin-induced protein PCNT115, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27010OsAffx.26177.1.S1_at11/114+15795311..15795658hypothetical protein
LOC_Os04g27020OsAffx.13991.1.S1_at11/114+15799098..15802139Cytochrome P450 family protein
LOC_Os04g27034NANA4+15807332..15810057hypothetical protein
LOC_Os04g27050OsAffx.26178.1.S1_at10/114+15812040..15812583hypothetical protein
LOC_Os04g27060Os.11266.1.S1_at11/114+15814091..15817930Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g27070OsAffx.3914.1.S1_at10/114+15819887..15824535Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27080OsAffx.26179.1.S1_at10/114+15826757..15827920hypothetical protein
LOC_Os04g27090OsAffx.13992.1.S1_at11/114+15830085..15830327hypothetical protein
LOC_Os04g27100OsAffx.13993.1.S1_at11/114+15834460..15836334WRKY transcription factor 19, putative
LOC_Os04g27110NANA4+15838404..15840837retrotransposon protein, putative, unclassified
LOC_Os04g27120OsAffx.20387.1.S1_x_at1/114+15841817..15844811transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11266.1.S1_at--880--91Chr04:15817338..15817362 (25 bp)
ATTCGAGAAGGTTAATGCCATGGCA
LOC_Os04g27060
Os.11266.1.S1_at--1066--2311Chr04:15817368..15817392 (25 bp)
AAAGGGATGCACATCGTCGCAGCTC
LOC_Os04g27060
Os.11266.1.S1_at--803--1631Chr04:15817420..15817444 (25 bp)
AGCGATGTCTGTCCCATACCAGGAA
LOC_Os04g27060
Os.11266.1.S1_at--328--2791Chr04:15817450..15817474 (25 bp)
AAGATCCACAACTTCGACCAGAATG
LOC_Os04g27060
Os.11266.1.S1_at--950--5391Chr04:15817491..15817515 (25 bp)
GAAGCTCACACCTGACGAGATGTCT
LOC_Os04g27060
Os.11266.1.S1_at--74--5491Chr04:15817516..15817540 (25 bp)
GAACTTGAGTCGTATGCTTCAGCTG
LOC_Os04g27060
Os.11266.1.S1_at--959--631Chr04:15817529..15817553 (25 bp)
ATGCTTCAGCTGACGTTGTGCAAGG
LOC_Os04g27060
Os.11266.1.S1_at--377--811Chr04:15817565..15817589 (25 bp)
ATGGTACTTTTCTGAACACCTGGAA
LOC_Os04g27060
Os.11266.1.S1_at--1059--9291Chr04:15817605..15817629 (25 bp)
TCCGCTGTCATCGTGGAGATCAGGC
LOC_Os04g27060
Os.11266.1.S1_at--831--6051Chr04:15817645..15817669 (25 bp)
GAGATTGTCATCTGCTGGGAGTTTG
LOC_Os04g27060
Os.11266.1.S1_at--792--2991Chr04:15817754..15817778 (25 bp)
AATGTTCCAGTGTTTTTGCCATGTG
LOC_Os04g27060
Target Sequence 
ATTCGAGAAGGTTAATGCCATGGCAGCGAGAAAGGGATGCACATCGTCGCAGCTCGCACTGGCCTGGGTTCATCNACCNA
AGGGAGCGATGTCTGTCCCATACCAGGAACCACAAAGATCCACAACTTCGACCAGAATGTGGGAGCACTGTCAGTGAAGC
TCACACCTGACGAGATGTCTGAACTTGAGTCGTATGCTTCAGCTGACGTTGTGCAAGGTGACAGGTATCATGGTACTTTT
CTGAACACCTGGAAGAACTCTGAAACTCCTCCGCTGTCATCGTGGAGATCAGGCAATTAATTAGTCAGAGAGATTGTCAT
CTGCTGGGAGTTTGATGGAGTTTTATTGTCACAAATATAGATAGCTTGGTGTATCAATCACATGTTTATTATGCAAATAA
AAGTTTGTATGGATTGATAATGTTCCAGTGTTTTTGCCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis