Browse Element(s) Details


OsAffx.14044.1.S1_at

Description tigr:9632.m02881
TID=OsAffx.14044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3039010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30360OsAffx.26252.1.S1_at11/114+17928616..17929913wall-associated kinase 3, putative
LOC_Os04g30370NANA4+17934039..17938750Protein kinase domain containing protein
LOC_Os04g30380Os.27639.1.S1_x_at9/114+17939380..17944436transposon protein, putative, unclassified, expressed
LOC_Os04g30380OsAffx.8980.1.S1_at4/114+17939380..17944436transposon protein, putative, unclassified, expressed
LOC_Os04g30390OsAffx.14044.1.S1_at10/114+17950235..17952489hypothetical protein
LOC_Os04g30410Os.55085.1.S1_at11/114+17962479..17966088hypothetical protein
LOC_Os04g30410OsAffx.14045.1.S1_at10/114+17962479..17966088hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14044.1.S1_at--400--10011Chr04:17950996..17951020 (25 bp)
TAGCAACTAGTTGTGCCTCTGTACC
LOC_Os04g30390
OsAffx.14044.1.S1_at--419--8751Chr04:17951015..17951039 (25 bp)
TGTACCCGATATGAGCCCACACTTG
LOC_Os04g30390
OsAffx.14044.1.S1_at--863--8551Chr04:17951147..17951171 (25 bp)
TGGAGGCCCCTTTATGAGTGAGCAA
LOC_Os04g30390
OsAffx.14044.1.S1_at--252--1112Chr04:17951163..17951187 (25 bp)
AGTGAGCAAGTACCCTTCTCTTTGG
LOC_Os04g30390
OsAffx.14044.1.S1_at--669--8611Chr04:17951185..17951209 (25 bp)
TGGTGCTCCCATCCAGCAGTAAAAG
LOC_Os04g30390
OsAffx.14044.1.S1_at--1--7051Chr04:17951203..17951227 (25 bp)
GTAAAAGTGCATCTCTGCTGTCAAA
LOC_Os04g30390
OsAffx.14044.1.S1_at--607--3692Chr04:17951305..17951329 (25 bp)
CTATTTGCGCTCTTTATCGCCAAAA
LOC_Os04g30390
OsAffx.14044.1.S1_at--473--7111NONE
GTCAGGCTTACAGGGCAACACAATT
NONE
OsAffx.14044.1.S1_at--257--5371Chr04:17952373..17952397 (25 bp)
GAAGACCTAGTGAACCATGATGCTA
LOC_Os04g30390
OsAffx.14044.1.S1_at--802--9871Chr04:17952396..17952420 (25 bp)
TACAGGGCCCAAATTCATCCAGGAA
LOC_Os04g30390
OsAffx.14044.1.S1_at--423--7311Chr04:17952432..17952456 (25 bp)
GTGCTCTAAGCAGTTGTTTGACATT
LOC_Os04g30390
Target Sequence 
TAGCAACTAGTTGTGCCTCTGTACCCGATATGAGCCCACACTTGGTTGAAGAATCAAATAAGGGAAATATAGAAATGCAG
AACCAATTATCTCATTTGCACTTGAATAATTTGATGAACCAACTTTCTTTTGATGCTTGGATGGAAGAAAGTGGAGGCCC
CTTTATGAGTGAGCAAGTACCCTTCTCTTTGGTGCTCCCATCCAGCAGTAAAAGTGCATCTCTGCTGTCAAAAATCGAAA
CCAGCTTGTGGGAGTCTGAGGAAAATATGGTTATCAGATTCATGGAAAATGTGGAGCTTTGCATGGGAGCTATTTGCGCT
CTTTATCGCCAAAAGAAGCTAATGGTTGAATCGACATGTGAAGAACGAACTAAGTTTACTTCACTCAATGAAAGTCAGGC
TTACAGGGCAACACAATTGGCAGAATTTCTTTTGGATGGTGATATTAATGGGCCAATGAAGAAGAACAAAGAAGACCTAG
TGAACCATGATGCTACAGGGCCCAAATTCATCCAGGAATATGCAATACAGTGCTCTAAGCAGTTGTTTGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis