Browse Element(s) Details


OsAffx.14070.1.S1_at

Description tigr:9632.m03000
TID=OsAffx.14070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3153011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31500NANA4+18644984..18651143retrotransposon protein, putative, unclassified
LOC_Os04g31510NANA4+18652054..18654910retrotransposon protein, putative, unclassified
LOC_Os04g31520OsAffx.3967.1.S1_s_at11/114+18658911..18659588expressed protein
LOC_Os04g31520Os.4835.1.S1_at7/114+18658911..18659588expressed protein
LOC_Os04g31530OsAffx.14070.1.S1_at11/114+18672030..18673476hypothetical protein
LOC_Os04g31540OsAffx.14071.1.S1_at11/114+18674642..18675934F-box domain containing protein
LOC_Os04g31550Os.14285.2.S1_at11/114+18682233..18682955expressed protein
LOC_Os04g31550Os.54120.1.S1_at1/114+18682233..18682955expressed protein
LOC_Os04g31559NANA4+18687197..18687462NA
LOC_Os04g31570OsAffx.14072.1.S1_at11/114+18687934..18689148F-box protein interaction domain containing protein, expressed
LOC_Os04g31580OsAffx.26271.1.S1_at11/114+18689828..18691402F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14070.1.S1_at--841--10571Chr04:18672525..18672549 (25 bp)
TTCTACTGGTTCATCGACGAGCATG
LOC_Os04g31530
OsAffx.14070.1.S1_at--841--6731Chr04:18672517..18672541 (25 bp)
GTTCATCGACGAGCATGAGCCGTGC
LOC_Os04g31530
OsAffx.14070.1.S1_at--541--9371Chr04:18672512..18672536 (25 bp)
TCGACGAGCATGAGCCGTGCGCGCT
LOC_Os04g31530
OsAffx.14070.1.S1_at--1132--4751Chr04:18672433..18672457 (25 bp)
GCTGCACGGGCTTCACGTACGACGA
LOC_Os04g31530
OsAffx.14070.1.S1_at--465--7571Chr04:18672426..18672450 (25 bp)
GGGCTTCACGTACGACGACCGCCTG
LOC_Os04g31530
OsAffx.14070.1.S1_at--1125--7231Chr04:18672248..18672272 (25 bp)
GTCGCCGGCGAACGCTGGTTCCACA
LOC_Os04g31530
OsAffx.14070.1.S1_at--493--1911Chr04:18672112..18672136 (25 bp)
ACGTGAACGTGCGAGGGAGCCGGTA
LOC_Os04g31530
OsAffx.14070.1.S1_at--1022--1671Chr04:18672095..18672119 (25 bp)
AGCCGGTACAGCTGTGAGCCGACTC
LOC_Os04g31530
OsAffx.14070.1.S1_at--335--4731Chr04:18672085..18672109 (25 bp)
GCTGTGAGCCGACTCCGACTATACA
LOC_Os04g31530
OsAffx.14070.1.S1_at--139--4071Chr04:18672070..18672094 (25 bp)
CGACTATACACCATGTCATCCGTTA
LOC_Os04g31530
OsAffx.14070.1.S1_at--1059--4331Chr04:18672060..18672084 (25 bp)
CCATGTCATCCGTTACGTGGAGAGC
LOC_Os04g31530
Target Sequence 
TTCTACTGGTTCATCGACGAGCATGAGCCGTGCGCGCTGCTGCGGTTCAGCCTGCGGGACGAGGCGTTCGACGTGGTCCC
CGTGCCCCCCGGGCTGCACGGGCTTCACGTACGACGACCGCCTGGCGGACCTCGCCGGCGAGCTGTGCTACGTGCATCGT
GTCCGCACGGGGGTTGCCACCCACGAAGTTTGGATGGCGGCGGCGGCGGTCGACGACGACGAGCCGGAGTGGTGGCTGCG
ATACCGAGTGGACCTGTGGGGGTACGCGTGGGGCTTGGTCGCCGGCGAACGCTGGTTCCACAGCTTCGGCGCCACGGCCG
GCGATGACGGCGTGGACGAGGAGGCGACGTTGGTGACCATGTTGTACAAGGAGCTGTGCTGGCACAGGGAGCGGAGCAAA
CCGGTGGTGAAAGACGTGAACGTGCGAGGGAGCCGGTACAGCTGTGAGCCGACTCCGACTATACACCATGTCATCCGTTA
CGTGGAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis