Browse Element(s) Details


OsAffx.14071.1.S1_at

Description tigr:9632.m03001
TID=OsAffx.14071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3154011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31500NANA4+18644984..18651143retrotransposon protein, putative, unclassified
LOC_Os04g31510NANA4+18652054..18654910retrotransposon protein, putative, unclassified
LOC_Os04g31520OsAffx.3967.1.S1_s_at11/114+18658911..18659588expressed protein
LOC_Os04g31520Os.4835.1.S1_at7/114+18658911..18659588expressed protein
LOC_Os04g31530OsAffx.14070.1.S1_at11/114+18672030..18673476hypothetical protein
LOC_Os04g31540OsAffx.14071.1.S1_at11/114+18674642..18675934F-box domain containing protein
LOC_Os04g31550Os.14285.2.S1_at11/114+18682233..18682955expressed protein
LOC_Os04g31550Os.54120.1.S1_at1/114+18682233..18682955expressed protein
LOC_Os04g31559NANA4+18687197..18687462NA
LOC_Os04g31570OsAffx.14072.1.S1_at11/114+18687934..18689148F-box protein interaction domain containing protein, expressed
LOC_Os04g31580OsAffx.26271.1.S1_at11/114+18689828..18691402F-box domain containing protein
LOC_Os04g31590OsAffx.32056.1.S1_at11/114+18699069..18702413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31590OsAffx.32056.1.S1_x_at10/114+18699069..18702413transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14071.1.S1_at--374--3491Chr04:18675334..18675358 (25 bp)
CAGGCATTGGCCGATCGGTGAATTG
LOC_Os04g31540
OsAffx.14071.1.S1_at--446--5691Chr04:18675380..18675404 (25 bp)
GACTTCTACTGGCTGAGTTACACCG
LOC_Os04g31540
OsAffx.14071.1.S1_at--901--1811Chr04:18675465..18675489 (25 bp)
ACGCCAAGTTCGACGTGGTCCGCGG
LOC_Os04g31540
OsAffx.14071.1.S1_at--494--5691Chr04:18675614..18675638 (25 bp)
GACTTCCTGGAGCTCTGGCAGCTAG
LOC_Os04g31540
OsAffx.14071.1.S1_at--311--6431Chr04:18675644..18675668 (25 bp)
GATCATGATCAGGAGTGGTCGCCAC
LOC_Os04g31540
OsAffx.14071.1.S1_at--997--9171Chr04:18675671..18675695 (25 bp)
TGCCGCATCAACCTGCTCGAGAGGG
LOC_Os04g31540
OsAffx.14071.1.S1_at--360--6391Chr04:18675697..18675721 (25 bp)
GATCGTCATACGGAAGGAGGGCTTC
LOC_Os04g31540
OsAffx.14071.1.S1_at--7--6731Chr04:18675758..18675782 (25 bp)
GTTCTGGATGACGAGCAGCTGTATC
LOC_Os04g31540
OsAffx.14071.1.S1_at--929--4731Chr04:18675775..18675799 (25 bp)
GCTGTATCGATACAACGAGCGGACT
LOC_Os04g31540
OsAffx.14071.1.S1_at--732--1191Chr04:18675842..18675866 (25 bp)
AGTATGAGCGGCAGGACGGCACCTT
LOC_Os04g31540
OsAffx.14071.1.S1_at--565--9611Chr04:18675873..18675897 (25 bp)
TAAGCATTACGTTGTCCCGTACGTG
LOC_Os04g31540
Target Sequence 
CAGGCATTGGCCGATCGGTGAATTGGGCGCGATCTGCGTGCGAGGGGACTTCTACTGGCTGAGTTACACCGCCGCCGGCG
CCGCCGGCGACGGCGAGGCGGAGATGGCGCTGCTCCGGTTCGGCCTGCGCGACGCCAAGTTCGACGTGGTCCGCGGCCCT
CGGGGCTGCACCTGCCGCCGCCGCACGCCCTCCTCCTCCGATGACGGCTACTTCTACTTCACGGACCGCGTCGTCGACCT
GTCCGGCAAGGTGTGCTACGTCCACGCGCCATTGGCGGCCGACTTCCTGGAGCTCTGGCAGCTAGCGGGGGATCATGATC
AGGAGTGGTCGCCACGCTGCCGCATCAACCTGCTCGAGAGGGGGATCGTCATACGGAAGGAGGGCTTCGTTCCCGTGTAC
CACCATGGGGAGGACATGCTGCTTGTTCTGGATGACGAGCAGCTGTATCGATACAACGAGCGGACTAGAGCGATCGAGGA
GGTTGCCAACTTGGAGCGGGAGCTAGAAAGTATGAGCGGCAGGACGGCACCTTGGGGTATAAGCATTACGTTGTCCCGTA
CGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis