Browse Element(s) Details


OsAffx.26271.1.S1_at

Description tigr:9632.m03005
TID=OsAffx.26271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3158011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31530OsAffx.14070.1.S1_at11/114+18672030..18673476hypothetical protein
LOC_Os04g31540OsAffx.14071.1.S1_at11/114+18674642..18675934F-box domain containing protein
LOC_Os04g31550Os.14285.2.S1_at11/114+18682233..18682955expressed protein
LOC_Os04g31550Os.54120.1.S1_at1/114+18682233..18682955expressed protein
LOC_Os04g31559NANA4+18687197..18687462NA
LOC_Os04g31570OsAffx.14072.1.S1_at11/114+18687934..18689148F-box protein interaction domain containing protein, expressed
LOC_Os04g31580OsAffx.26271.1.S1_at11/114+18689828..18691402F-box domain containing protein
LOC_Os04g31590OsAffx.32056.1.S1_at11/114+18699069..18702413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31590OsAffx.32056.1.S1_x_at10/114+18699069..18702413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.1.S1_s_at9/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.3.S1_s_at7/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.4.S1_s_at5/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26271.1.S1_at--1046--1831Chr04:18690869..18690893 (25 bp)
ACGCTGACCGTGTACGAGCACAGGG
LOC_Os04g31580
OsAffx.26271.1.S1_at--794--531Chr04:18690986..18691010 (25 bp)
ATCGCTGGCTATGGTTGTGCTCGGC
LOC_Os04g31580
OsAffx.26271.1.S1_at--177--10811Chr04:18691000..18691024 (25 bp)
TTGTGCTCGGCAATGTGGCGGATCA
LOC_Os04g31580
OsAffx.26271.1.S1_at--535--8611Chr04:18691057..18691081 (25 bp)
TGGTGCTGCTCATGATCGCATGCAG
LOC_Os04g31580
OsAffx.26271.1.S1_at--1150--8651Chr04:18691082..18691106 (25 bp)
TGTGGCGACGGCGACTATTACTGCG
LOC_Os04g31580
OsAffx.26271.1.S1_at--907--5691Chr04:18691094..18691118 (25 bp)
GACTATTACTGCGAGCGATGCGGCG
LOC_Os04g31580
OsAffx.26271.1.S1_at--558--10411Chr04:18691129..18691153 (25 bp)
TTATTGTGAGCGATGTGGCGCCGAC
LOC_Os04g31580
OsAffx.26271.1.S1_at--176--10751Chr04:18691235..18691259 (25 bp)
TTGGGCCAAGGTGACCATGGAGATC
LOC_Os04g31580
OsAffx.26271.1.S1_at--20--1931Chr04:18691263..18691287 (25 bp)
ACGGTGACGAATATGACGACGGATA
LOC_Os04g31580
OsAffx.26271.1.S1_at--933--8251Chr04:18691328..18691352 (25 bp)
GGCAGATACAAACCATTGCGACCTG
LOC_Os04g31580
OsAffx.26271.1.S1_at--477--10711Chr04:18691343..18691367 (25 bp)
TTGCGACCTGCCCTGCGAAGTCTTT
LOC_Os04g31580
Target Sequence 
ACGCTGACCGTGTACGAGCACAGGGTGGGGATCCACCGGCTCGACGGCGGCCGGGAGAGCCACCCGGAGAAGGTGGTGGA
CATGGCTGCCGTGACGCGGGGTCTTGTCGGCCAATGGATCGCTGGCTATGGTTGTGCTCGGCAATGTGGCGGATCAGGCG
ATCATGATCGCGAGCAATGCGACGGTGGTGGTGCTGCTCATGATCGCATGCAGTGTGGCGACGGCGACTATTACTGCGAG
CGATGCGGCGGCGACGGCGATTATTGTGAGCGATGTGGCGCCGACGACGAGGATGATTGGGAGCAATGTGGTGGTGACGA
TGGTGATGGCGATGGCGATGGCGATGGAGTCGGGGAGCCATTGGGTTTGGGCCAAGGTGACCATGGAGATCATGACGGTG
ACGAATATGACGACGGATACGATTATGATGGTGAGGAGGAATATTGGTACCTACAAGGTGGCAGATACAAACCATTGCGA
CCTGCCCTGCGAAGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis