Browse Element(s) Details


OsAffx.14080.1.S1_at

Description tigr:9632.m03057
TID=OsAffx.14080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3209011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32050Os.15041.1.S1_a_at11/114+19033410..19037973transposon protein, putative, unclassified, expressed
LOC_Os04g32060Os.55758.1.S1_at10/114+19040724..19044486transposon protein, putative, unclassified, expressed
LOC_Os04g32070Os.54991.1.S1_at11/114+19045745..19047749oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g32080Os.20001.1.S1_at6/114+19049260..19051632steroleosin, putative, expressed
LOC_Os04g32090OsAffx.14080.1.S1_at11/114+19053045..19058577expressed protein
LOC_Os04g32100OsAffx.3972.1.S1_at7/114+19079762..19080682hypothetical protein
LOC_Os04g32110Os.17761.2.S1_x_at11/114+19081824..19083951ACT domain containing protein, putative, expressed
LOC_Os04g32110Os.17761.1.S1_a_at11/114+19081824..19083951ACT domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14080.1.S1_at--850--9851Chr04:19054355..19054379 (25 bp)
TACAGAGGCCTTTGTTGACCGTGAT
LOC_Os04g32090
OsAffx.14080.1.S1_at--402--2151Chr04:19054222..19054246 (25 bp)
ACAGAACATGATTGGCCTTTCCGCT
LOC_Os04g32090
OsAffx.14080.1.S1_at--207--4951Chr04:19054131..19054155 (25 bp)
GCATTTGAGCATTTCCTGGTGAACT
LOC_Os04g32090
OsAffx.14080.1.S1_at--527--6131Chr04:19053509..19053532 (24 bp)
GAGGGCACAATCCTTATTGAGCTCA
LOC_Os04g32090
OsAffx.14080.1.S1_at--583--6571Chr04:19053479..19053503 (25 bp)
GATTCTTCTGTTCCTATTGTACGTG
LOC_Os04g32090
OsAffx.14080.1.S1_at--738--6751Chr04:19053439..19053463 (25 bp)
GTTCAAGTTCGGATGCGTGGCAGCT
LOC_Os04g32090
OsAffx.14080.1.S1_at--571--2391Chr04:19053400..19053424 (25 bp)
AAACATTTTCTGGTCAGGGCTACAT
LOC_Os04g32090
OsAffx.14080.1.S1_at--446--4431Chr04:19053370..19053394 (25 bp)
GCCTGGATTTTATGGACACCACTCC
LOC_Os04g32090
OsAffx.14080.1.S1_at--44--9011Chr04:19053344..19053368 (25 bp)
TGAATATATTCAGCTTCTCCGAGGC
LOC_Os04g32090
OsAffx.14080.1.S1_at--703--3431Chr04:19053300..19053324 (25 bp)
CAGTCATACGATTGTGGCCTTAATA
LOC_Os04g32090
OsAffx.14080.1.S1_at--1055--2211Chr04:19053259..19053283 (25 bp)
ACAAGGTGCGTTTCATAGGTACTCT
LOC_Os04g32090
Target Sequence 
TACAGAGGCCTTTGTTGACCGTGATATTGTACAGAACATGATTGGCCTTTCCGCTGAGGAGCTTGCAGCTGCTCTTTCTT
CTGGTGGCCCAGCACAAGCCAATATAAGAAAAACTATGAAAGCATTTGAGCATTTCCTGGTGAACTTTGAGGGCACAATC
CTTATTGAGCTCAACAGAGATTCTTCTGTTCCTATTGTACGTGAGATGAATAAAGGTTGTTCAAGTTCGGATGCGTGGCA
GCTGCTTCGGAGGGTGAAAACATTTTCTGGTCAGGGCTACATGCGGAGCCTGGATTTTATGGACACCACTCCATGAATAT
ATTCAGCTTCTCCGAGGCGCTATGCAAAAGATAAGGCCAGTCATACGATTGTGGCCTTAATATGCCAAATTTGCCAAGAC
AAGGTGCGTTTCATAGGTACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis