Browse Element(s) Details


OsAffx.14195.1.S1_at

Description tigr:9632.m03660
TID=OsAffx.14195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3876011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38740OsAffx.24606.2.S1_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38740OsAffx.24606.2.S1_x_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38750Os.7714.1.S1_at11/114+22808289..22810012Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
LOC_Os04g38760OsAffx.14195.1.S1_at11/114+22812991..22814888hypothetical protein
LOC_Os04g38770OsAffx.26379.1.S1_at11/114+22821096..22822421Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os04g38780NANA4+22826590..22829209K-box region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14195.1.S1_at--368--3531Chr04:22814820..22814844 (25 bp)
CCTGGCTTTTAATTTCCGGGCACTG
LOC_Os04g38760
OsAffx.14195.1.S1_at--170--8471Chr04:22814818..22814842 (25 bp)
TGGCTTTTAATTTCCGGGCACTGTT
LOC_Os04g38760
OsAffx.14195.1.S1_at--555--9271Chr04:22814806..22814830 (25 bp)
TCCGGGCACTGTTAACTTTTGGCCA
LOC_Os04g38760
OsAffx.14195.1.S1_at--256--3331Chr04:22814800..22814824 (25 bp)
CACTGTTAACTTTTGGCCATGCTAA
LOC_Os04g38760
OsAffx.14195.1.S1_at--422--3671Chr04:22814791..22814815 (25 bp)
CTTTTGGCCATGCTAAAGTCTCGTG
LOC_Os04g38760
OsAffx.14195.1.S1_at--232--2851Chr04:22814776..22814800 (25 bp)
AAGTCTCGTGGATTCCAAGTGTCAA
LOC_Os04g38760
OsAffx.14195.1.S1_at--338--91Chr04:22814765..22814789 (25 bp)
ATTCCAAGTGTCAATCATCGTCTGC
LOC_Os04g38760
OsAffx.14195.1.S1_at--526--2871Chr04:22814760..22814784 (25 bp)
AAGTGTCAATCATCGTCTGCATGGC
LOC_Os04g38760
OsAffx.14195.1.S1_at--1147--8711Chr04:22814757..22814781 (25 bp)
TGTCAATCATCGTCTGCATGGCAGA
LOC_Os04g38760
OsAffx.14195.1.S1_at--401--3551Chr04:22814750..22814774 (25 bp)
CATCGTCTGCATGGCAGAGGGCAAA
LOC_Os04g38760
OsAffx.14195.1.S1_at--750--2731Chr04:22814725..22814747 (23 bp)
AAGCAAGATCTTGTCCAACAAAGAA
LOC_Os04g38760
Target Sequence 
CCTGGCTTTTAATTTCCGGGCACTGTTAACTTTTGGCCATGCTAAAGTCTCGTGGATTCCAAGTGTCAATCATCGTCTGC
ATGGCAGAGGGCAAAAAAAGCAAGATCTTGTCCAACAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis