Browse Element(s) Details


OsAffx.14204.1.S1_at

Description tigr:9632.m03740
TID=OsAffx.14204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3946011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39440Os.8483.1.S1_at11/114+23273840..23276266Ras-related protein Rab-2-B, putative, expressed
LOC_Os04g39450Os.34697.1.S1_at11/114+23280931..23283511Uncharacterised protein family containing protein, expressed
LOC_Os04g39460OsAffx.14204.1.S1_at11/114+23287746..23290532NB-ARC domain containing protein, expressed
LOC_Os04g39470OsAffx.14205.1.S1_at11/114+23291540..23292855Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g39489Os.7445.1.S1_at11/114+23293688..23303872amino acid transporter family protein, putative, expressed
LOC_Os04g39510OsAffx.26390.1.S1_at11/114+23305096..23306172hypothetical protein
LOC_Os04g39520OsAffx.4030.1.S1_at11/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39520OsAffx.6586.1.S1_at1/114+23308226..23313262Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14204.1.S1_at--773--7571Chr04:23289965..23289989 (25 bp)
GGGCGAGCAACCATGGTCACTTGAT
LOC_Os04g39460
OsAffx.14204.1.S1_at--938--7091Chr04:23289980..23290004 (25 bp)
GTCACTTGATCGGACTGTCAGCATG
LOC_Os04g39460
OsAffx.14204.1.S1_at--421--711Chr04:23290002..23290026 (25 bp)
ATGATGCGTTACAGGGTGCCCGATA
LOC_Os04g39460
OsAffx.14204.1.S1_at--895--6451Chr04:23290023..23290047 (25 bp)
GATAAGCCTTTGGACGTTGACAGCG
LOC_Os04g39460
OsAffx.14204.1.S1_at--966--6651Chr04:23290038..23290062 (25 bp)
GTTGACAGCGTGTATCGTCCACAGA
LOC_Os04g39460
OsAffx.14204.1.S1_at--987--1151Chr04:23290069..23290093 (25 bp)
AGTCATTGGACATGGATTGCCGCAA
LOC_Os04g39460
OsAffx.14204.1.S1_at--273--9111Chr04:23290105..23290129 (25 bp)
TGCTGCCTTCTCTCCAAAGTATCAT
LOC_Os04g39460
OsAffx.14204.1.S1_at--1117--5151Chr04:23290135..23290159 (25 bp)
GCAAGCTCCCAAAGGCCAAGATTGT
LOC_Os04g39460
OsAffx.14204.1.S1_at--800--7531Chr04:23290168..23290192 (25 bp)
GTGGCAGCCTGGAGTATTTATCCTC
LOC_Os04g39460
OsAffx.14204.1.S1_at--417--5931Chr04:23290221..23290245 (25 bp)
GAGCATCTTATATCCTACGACACAG
LOC_Os04g39460
OsAffx.14204.1.S1_at--571--1391Chr04:23290273..23290297 (25 bp)
AGACGGTCTTTCCAAGCCTCAAGGA
LOC_Os04g39460
Target Sequence 
GGGCGAGCAACCATGGTCACTTGATCGGACTGTCAGCATGATGCGTTACAGGGTGCCCGATAAGCCTTTGGACGTTGACA
GCGTGTATCGTCCACAGACTAGCCAGTCATTGGACATGGATTGCCGCAAGCTGGTACCCCTGCTGCCTTCTCTCCAAAGT
ATCATCCTTCGCAAGCTCCCAAAGGCCAAGATTGTTTGGCAGGGTGGCAGCCTGGAGTATTTATCCTCCTTGAGCATTTC
ATCCTGCAGTGTTCTTGAGCATCTTATATCCTACGACACAGAAGGATTGAGCCATGGATCGCCTGCGGAGACGGTCTTTC
CAAGCCTCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis