Browse Element(s) Details


OsAffx.14212.1.S1_at

Description tigr:9632.m03799
TID=OsAffx.14212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F23N19.8, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4001011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39970OsAffx.26399.1.S1_at11/114+23571692..23573697vacuolar sorting protein 9 domain-containing protein, putative, expressed
LOC_Os04g39980Os.7806.1.S1_at11/114+23576312..23578418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40010OsAffx.14212.1.S1_at11/114+23596314..23597951hypothetical protein
LOC_Os04g40020Os.56993.1.S1_at11/114+23599462..23600314expressed protein
LOC_Os04g40030OsAffx.26400.1.S1_at11/114+23607513..23609887F-box domain containing protein, expressed
LOC_Os04g40040Os.9293.1.S1_at11/114+23610611..23617066Copper amine oxidase, enzyme domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14212.1.S1_at--758--6191Chr04:23596850..23596874 (25 bp)
GAGGCAGGATTGGTCCCTGACTATT
LOC_Os04g40010
OsAffx.14212.1.S1_at--503--8955Chr11:24632756..24632775 (20 bp)
TGACTATTTCACCATTTCTTCTCTG
NONE
OsAffx.14212.1.S1_at--332--3911Chr04:23596811..23596835 (25 bp)
CTGGCTGCTGGCTTTCTGAAAACTG
LOC_Os04g40010
OsAffx.14212.1.S1_at--315--6031Chr04:23596638..23596662 (25 bp)
GAGAGGACTTGTACCATCTACTACA
LOC_Os04g40010
OsAffx.14212.1.S1_at--312--6291Chr04:23596554..23596578 (25 bp)
GATGTTGGACCATTTTAGCTCTACT
LOC_Os04g40010
OsAffx.14212.1.S1_at--468--10011Chr04:23596539..23596563 (25 bp)
TAGCTCTACTGGTGTTCCCTGTGAT
LOC_Os04g40010
OsAffx.14212.1.S1_at--1062--8651Chr04:23596520..23596544 (25 bp)
TGTGATTCAGTCTCCTTCAACACTA
LOC_Os04g40010
OsAffx.14212.1.S1_at--279--5051Chr04:23596473..23596497 (25 bp)
GCAGAATGCTTCAGTTATCCGTATG
LOC_Os04g40010
OsAffx.14212.1.S1_at--1152--532Chr02:18843015..18843037 (22 bp)
ATCCGTATGGTTCTCTATCGTATGC
NONE
OsAffx.14212.1.S1_at--378--10131Chr04:23596401..23596425 (25 bp)
TATGACATGCTTACTCCGGTACTTT
LOC_Os04g40010
OsAffx.14212.1.S1_at--1054--6751Chr04:23596349..23596373 (25 bp)
GTTAACCTTGTTGAGAGTCTGCGAA
LOC_Os04g40010
Target Sequence 
GAGGCAGGATTGGTCCCTGACTATTTCACCATTTCTTCTCTGGCTGCTGGCTTTCTGAAAACTGGGGATGTCATGACCTG
TCAGAATTTTATACGAATGGTTAAGAAAGCATTAGCTTTGGTTAGTGGAATGATGGAGAGAGGACTTGTACCATCTACTA
CAACATATAACACTATACTGAAAGGCTTCTGTATGGAGCTGGATCTTCAGGGGGCATTGCAGATGTTGGACCATTTTAGC
TCTACTGGTGTTCCCTGTGATTCAGTCTCCTTCAACACTATCCTCTCTGCAGCCTGCAGGCAGCAGAATGCTTCAGTTAT
CCGTATGGTTCTCTATCGTATGCATGTGGAAGGAATCAACCTTGATGCCATCAGTATGACATGCTTACTCCGGTACTTTC
ACAAATGTGGGAAGTTTGCTGAAAGTGTTAACCTTGTTGAGAGTCTGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis