Browse Element(s) Details


OsAffx.14244.1.S1_at

Description tigr:9632.m04080
TID=OsAffx.14244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4268010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42634OsAffx.4060.1.S1_at11/114+25006094..25009700hypothetical protein
LOC_Os04g42634OsAffx.4061.1.S1_at10/114+25006094..25009700hypothetical protein
LOC_Os04g42634Os.25318.1.A1_at9/114+25006094..25009700hypothetical protein
LOC_Os04g42650Os.50505.2.S1_at11/114+25013340..25015569expressed protein
LOC_Os04g42670Os.49610.1.S1_at11/114+25025431..25027439F-box domain containing protein, expressed
LOC_Os04g42680OsAffx.14244.1.S1_at10/114+25030836..25032080hypothetical protein
LOC_Os04g42690Os.20755.1.S1_at11/114+25032328..25034055UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g42700Os.50861.1.S1_at11/114+25034712..25039323leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g42710NANA4+25044656..25046532retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14244.1.S1_at--658--8811Chr04:25031968..25031992 (25 bp)
TGTTGTCGAGTAAGACCACCACCGA
LOC_Os04g42680
OsAffx.14244.1.S1_at--263--5331Chr04:25031906..25031930 (25 bp)
GAAGTGTCCTTCTTGTTGCTCATGT
LOC_Os04g42680
OsAffx.14244.1.S1_at--937--10231Chr04:25031873..25031897 (25 bp)
TTTGAAACCCCAAGATCCTCGGCTA
LOC_Os04g42680
OsAffx.14244.1.S1_at--582--6371Chr04:25031860..25031884 (25 bp)
GATCCTCGGCTATTGGATTTGGCAT
LOC_Os04g42680
OsAffx.14244.1.S1_at--123--6531Chr04:25031845..25031869 (25 bp)
GATTTGGCATTGATCGAGCTTGGCG
LOC_Os04g42680
OsAffx.14244.1.S1_at--408--1551Chr04:25031830..25031853 (24 bp)
AGCTTGGCGTCATCATCTCCAGGTA
LOC_Os04g42680
OsAffx.14244.1.S1_at--84--7011Chr04:25031719..25031743 (25 bp)
GTACTGATAGGTACCACGCCTAGTA
LOC_Os04g42680
OsAffx.14244.1.S1_at--89--1831Chr04:25031704..25031728 (25 bp)
ACGCCTAGTACCATCGGGTATCGAC
LOC_Os04g42680
OsAffx.14244.1.S1_at--331--6911NONE
GTATCGACCAGACTGCGTAGCAGCA
NONE
OsAffx.14244.1.S1_at--1135--5951Chr04:25030878..25030902 (25 bp)
GAGAAGTACCGGTAACTCCTTGCGA
LOC_Os04g42680
OsAffx.14244.1.S1_at--888--7051Chr04:25030867..25030891 (25 bp)
GTAACTCCTTGCGATTCGATCAGTT
LOC_Os04g42680
Target Sequence 
TGTTGTCGAGTAAGACCACCACCGACCACCATTGCCGCCAAGTGCAAGGGAGGATAGGGGAGGAAGTGTCCTTCTTGTTG
CTCATGTTCGACAAATTTGAAACCCCAAGATCCTCGGCTATTGGATTTGGCATTGATCGAGCTTGGCGTCATCATCTCCA
GGTACCAGGTCTAGTACTGATAGGTACCACGCCTAGTACCATCGGGTATCGACCAGACTGCGTAGCAGCAAATAGCTATG
CGAGAAGTACCGGTAACTCCTTGCGATTCGATCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis