Browse Element(s) Details


OsAffx.14307.1.S1_at

Description tigr:9632.m04546
TID=OsAffx.14307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4711011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47090NANA4+27742439..27743838transposon protein, putative, unclassified
LOC_Os04g47100OsAffx.22848.3.S1_x_at2/114+27746726..27752684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47110OsAffx.14307.1.S1_at11/114+27761777..27762956hypothetical protein
LOC_Os04g47120Os.17954.1.S1_at11/114+27765032..27771465Acyl-CoA thioesterase family protein, expressed
LOC_Os04g47130OsAffx.26496.1.S1_at10/114+27771819..27773295expressed protein
LOC_Os04g47140Os.56959.1.S1_at11/114+27775810..27776728expressed protein
LOC_Os04g47140Os.51447.1.S1_s_at1/114+27775810..27776728expressed protein
LOC_Os04g47150Os.53925.1.A1_at11/114+27778105..27780866Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14307.1.S1_at--970--8491Chr04:27762208..27762232 (25 bp)
TGGCAGGAAGTGACGGAGCTCATCC
LOC_Os04g47110
OsAffx.14307.1.S1_at--589--5911Chr04:27762193..27762217 (25 bp)
GAGCTCATCCGTGTGGAGAAAGCCA
LOC_Os04g47110
OsAffx.14307.1.S1_at--1147--5531Chr04:27762176..27762200 (25 bp)
GAAAGCCAAGAAGTACCTAGAACAG
LOC_Os04g47110
OsAffx.14307.1.S1_at--1135--10011Chr04:27762159..27762183 (25 bp)
TAGAACAGCACTACACCTGCGACGC
LOC_Os04g47110
OsAffx.14307.1.S1_at--161--951Chr04:27762087..27762111 (25 bp)
AGGAAGGCTCGGAAACTCTGCGCCC
LOC_Os04g47110
OsAffx.14307.1.S1_at--508--6191Chr04:27762029..27762053 (25 bp)
GAGGAAGCCCAAGTACATCGCGCGG
LOC_Os04g47110
OsAffx.14307.1.S1_at--931--2091Chr04:27762015..27762039 (25 bp)
ACATCGCGCGGGTGCGATCAGGTTT
LOC_Os04g47110
OsAffx.14307.1.S1_at--317--8171Chr04:27761985..27762009 (25 bp)
GGAACAAGTACAACCGCGCGCATTA
LOC_Os04g47110
OsAffx.14307.1.S1_at--46--9851Chr04:27761923..27761947 (25 bp)
TACAAGTTCGTGCTCTACTACCCCG
LOC_Os04g47110
OsAffx.14307.1.S1_at--277--8191Chr04:27761886..27761910 (25 bp)
GGAAGCCGCCACAGTACACCGTCGA
LOC_Os04g47110
OsAffx.14307.1.S1_at--1082--5991Chr04:27761833..27761857 (25 bp)
GAGACCTGCGTCATCAGGTTCCACG
LOC_Os04g47110
Target Sequence 
TGGCAGGAAGTGACGGAGCTCATCCGTGTGGAGAAAGCCAAGAAGTACCTAGAACAGCACTACACCTGCGACGCGCCCCC
GCCCCCGCCCGACAACGACGGCGGCGGCGAGGACGCCGACGAGGAAGGCTCGGAAACTCTGCGCCCGGTGGCCTTGCCGC
CGCCGCCGGGACCGGAGCTGAGGAAGCCCAAGTACATCGCGCGGGTGCGATCAGGTTTCGAGTGGAACAAGTACAACCGC
GCGCATTACGACCACGACCACCCACCGCCCAAGACCGTCAAGGGCTACAAGTTCGTGCTCTACTACCCCGACCTCGCCGG
CGGGAAGCCGCCACAGTACACCGTCGACGAGGACGGCAGCAACAGCGGCGGCGGCGAGACCTGCGTCATCAGGTTCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis