Browse Element(s) Details


OsAffx.14333.1.S1_at

Description tigr:9632.m04750
TID=OsAffx.14333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4896010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48910NANA4+28952146..28954859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified
LOC_Os04g48930Os.49111.1.S1_at9/114+28959795..28962564ferric-chelate reductase, putative, expressed
LOC_Os04g48940Os.32496.1.S1_at9/114+28967957..28974485Mechanosensitive ion channel family protein, expressed
LOC_Os04g48950Os.52867.1.S1_at11/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48950OsAffx.31336.1.S1_x_at1/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48960OsAffx.14333.1.S1_at10/114+28978925..28980815hypothetical protein
LOC_Os04g48970OsAffx.22034.1.S1_at2/114+28981295..28984868transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g48980OsAffx.14334.1.S1_at11/114+28989138..28989398hypothetical protein
LOC_Os04g48989NANA4+28992501..28992744NA
LOC_Os04g49000Os.53886.1.S1_at11/114+28994256..28995284Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49010NANA4+29000111..29001526hypothetical protein
LOC_Os04g49020OsAffx.22896.1.S1_x_at1/114+29003818..29008320retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14333.1.S1_at--120--7231Chr04:28979166..28979190 (25 bp)
GTCGCACTGGGAGCTTTCTAGGTGA
LOC_Os04g48960
OsAffx.14333.1.S1_at--746--2631NONE
AACCAGGGATGGCTGTTCTTTGCGA
NONE
OsAffx.14333.1.S1_at--357--871Chr04:28980305..28980326 (22 bp)
ATGGCTGTTCTTTGCGATTGTCGAA
LOC_Os04g48960
OsAffx.14333.1.S1_at--757--9231Chr04:28980364..28980388 (25 bp)
TCCATCTCGGAGGTATCTGACATGT
LOC_Os04g48960
OsAffx.14333.1.S1_at--1022--9471Chr04:28980379..28980401 (23 bp)
TCTGACATGTGCAAGAGCTCGGGAT
LOC_Os04g48960
OsAffx.14333.1.S1_at--88--7531Chr04:28980487..28980511 (25 bp)
GTGGCTGCACTTTCTGGAGTTGGTA
LOC_Os04g48960
OsAffx.14333.1.S1_at--888--2511Chr04:28980521..28980545 (25 bp)
AACTACACCTTATTTGAGGCAAGTG
LOC_Os04g48960
OsAffx.14333.1.S1_at--91--3871Chr04:28980597..28980621 (25 bp)
CTGAGAGCATCTCTTGTGAGTGCAA
LOC_Os04g48960
OsAffx.14333.1.S1_at--197--5131Chr04:28980624..28980648 (25 bp)
GCACAAATTGATGAGCTGACGGCTG
LOC_Os04g48960
OsAffx.14333.1.S1_at--849--4751Chr04:28980638..28980662 (25 bp)
GCTGACGGCTGTGCACAATGGAGAT
LOC_Os04g48960
OsAffx.14333.1.S1_at--1139--2511Chr04:28980751..28980775 (25 bp)
AACTTCTGTTGCTAATTGTTGCTGG
LOC_Os04g48960
Target Sequence 
GTCGCACTGGGAGCTTTCTAGGTGAACCAGGGATGGCTGTTCTTTGCGATTGTCGAAGGAAGGCAGCAAGATGGATTTCT
TGGAGTGAGGATAATCCATCTCGGAGGTATCTGACATGTGCAAGAGCTCGGGATGGTGGCTGCACTTTCTGGAGTTGGTA
TGAGCCAGAAACTACACCTTATTTGAGGCAAGTGTTAAATGATTTGCACAATGTTGTTCGTGGTTTGAAGGAGGAGAAAT
CAATTCTGAGAGCATCTCTTGTGAGTGCAAGAGCACAAATTGATGAGCTGACGGCTGTGCACAATGGAGATGTGGCTGAT
TGGACAAGAAAGCTAAAGGAGAAGGATGATTTAGCTTGTGAACTTAGAGCTAGAGTTGTTCAGTTAGAAGAGGGAAGGAA
ACTTCTGTTGCTAATTGTTGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis