Browse Element(s) Details


OsAffx.14394.1.S1_at

Description tigr:9632.m05166
TID=OsAffx.14394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5325010/11hypothetical protein
LOC_Os04g532901/11Polyphenol oxidase I, chloroplast, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53220Os.4147.1.S1_at11/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_x_at8/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_at6/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53230Os.20702.1.S1_at11/114+31481897..31484526Aminomethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os04g53240Os.14109.1.S1_at8/114+31497308..31500105Autophagy-related protein 8 precursor, putative, expressed
LOC_Os04g53250OsAffx.14394.1.S1_at10/114+31502654..31504041hypothetical protein
LOC_Os04g53250Os.55517.1.S1_x_at1/114+31502654..31504041hypothetical protein
LOC_Os04g53260OsAffx.26590.2.S1_at10/114+31508706..31510284Common central domain of tyrosinase family protein, expressed
LOC_Os04g53270NANA4+31511700..31514653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53280Os.10703.2.S1_x_at1/114+31514970..31521059retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53290Os.55517.1.S1_x_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53290OsAffx.14394.1.S1_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14394.1.S1_at--624--911Chr04:31502677..31502701 (25 bp)
AGGCTGGGCACCGTTGAGCACTCGA
LOC_Os04g53250
OsAffx.14394.1.S1_at--95--5951Chr04:31502692..31502716 (25 bp)
GAGCACTCGAGCATGTGCCGCACGG
LOC_Os04g53250
OsAffx.14394.1.S1_at--888--9211Chr04:31502722..31502746 (25 bp)
TCCACCAATGGACCGGCGATCAGAG
LOC_Os04g53250
OsAffx.14394.1.S1_at--999--5431Chr04:31502828..31503047 (25 bp)
GAACGCCTGTGGATAGAAGCCCCTG
LOC_Os04g53250
OsAffx.14394.1.S1_at--595--7951Chr04:31503094..31503118 (25 bp)
GGATAGCGAATATGCATTGTTGCGG
LOC_Os04g53250
OsAffx.14394.1.S1_at--221--10711Chr04:31503126..31503150 (25 bp)
TTGCGTTCCTTTCGCACCAGATTTC
LOC_Os04g53250
OsAffx.14394.1.S1_at--308--1731NONE
ACCAGGGTCCTGAGAGCTGTCCACA
NONE
OsAffx.14394.1.S1_at--142--4552Chr04:31522238..31522262 (25 bp)
GCCCAAGACGTCGAGGAGCCGCAAG
LOC_Os04g53290
OsAffx.14394.1.S1_at--1070--1891Chr04:31503947..31503971 (25 bp)
ACGTGCACCGGGAGCGTCGTGCTAA
LOC_Os04g53250
OsAffx.14394.1.S1_at--645--7191Chr04:31503962..31503986 (25 bp)
GTCGTGCTAACGCAGACAGTGTCCA
LOC_Os04g53250
OsAffx.14394.1.S1_at--541--1711Chr04:31503986..31504010 (25 bp)
ACCACGACGAGAGGATGCGTTCTCC
LOC_Os04g53250
Target Sequence 
AGGCTGGGCACCGTTGAGCACTCGAGCATGTGCCGCACGGCCCCGTCCACCAATGGACCGGCGATCAGAGGCAGCCGAAC
GACGAGGACATGGGCGCGCACCTTACTCGGCGGCACGCGACCCGGTTTTCTTCGCGCACCACGGCAACATCGAACGCCTG
TGGATAGAAGCCCCTGCTTTGACCCATGCTCTCTCTTCCTCCTTGATCTTTGCTAGGATTGAGGATAGCGAATATGCATT
GTTGCGGAAGATTCTTGCGTTCCTTTCGCACCAGATTTCCCACGAGATTAAAATCACCAGGGTCCTGAGAGCTGTCCACA
CCGGCGCCCACGACAGGCGCCTGCCGGGGAATCTGGACAAGACCGTGCGGGTGGCAGTGATGAGGCCCAAGACGTCGAGG
AGCCGCAAGGAGAAGGACGCCGAGGAGGAGGTGCTTGTCATCGAGGGGATCGAGCGAGAGCGGGAACATCGCGGCGGCGA
GTACGTGCACCGGGAGCGTCGTGCTAACGCAGACAGTGTCCACCACGACGAGAGGATGCGTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis