Browse Element(s) Details


Os.55517.1.S1_x_at

Description gb:AK108237.1
DB_XREF= gi:32993446
TID=Os.55517.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G09, full insert sequence.
FL= gb:AK108237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5330011/11Common central domain of tyrosinase family protein, expressed
LOC_Os04g532901/11Polyphenol oxidase I, chloroplast, putative
LOC_Os04g532501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53260OsAffx.26590.2.S1_at10/114+31508706..31510284Common central domain of tyrosinase family protein, expressed
LOC_Os04g53270NANA4+31511700..31514653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53280Os.10703.2.S1_x_at1/114+31514970..31521059retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53290Os.55517.1.S1_x_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53290OsAffx.14394.1.S1_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53300Os.55517.1.S1_x_at11/114+31530077..31532540Common central domain of tyrosinase family protein, expressed
LOC_Os04g53310Os.23163.1.S1_at11/114+31532517..31540357Soluble starch synthase 3, chloroplast precursor, putative, expressed
LOC_Os04g53320OsAffx.26591.1.S1_at11/114+31543868..31544446hypothetical protein
LOC_Os04g53330Os.23474.1.A1_at11/114+31545070..31547791RRM-containing protein, putative, expressed
LOC_Os04g53340NANA4+31547980..31548210hypothetical protein
LOC_Os04g53350OsAffx.4163.1.S1_at11/114+31549966..31554077expressed protein
LOC_Os04g53350Os.57431.1.S1_x_at7/114+31549966..31554077expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55517.1.S1_x_at--928--1691Chr04:31532109..31532133 (25 bp)
ACCACTCCACGTACGTCAAGTTCGA
LOC_Os04g53300
Os.55517.1.S1_x_at--316--2833Chr04:31532126..31532150 (25 bp)
AAGTTCGACGTGTTCGTGAACGCGC
LOC_Os04g53300
Os.55517.1.S1_x_at--52--4071Chr04:31532262..31532286 (25 bp)
CGAGGTTCGGCATATGCGACTTGCT
LOC_Os04g53300
Os.55517.1.S1_x_at--507--611Chr04:31532275..31532299 (25 bp)
ATGCGACTTGCTGGACGACATCGGC
LOC_Os04g53300
Os.55517.1.S1_x_at--1092--5731Chr04:31532303..31532327 (25 bp)
GACGGCGACAAGACGATCGTCGTGT
LOC_Os04g53300
Os.55517.1.S1_x_at--839--491Chr04:31532318..31532342 (25 bp)
ATCGTCGTGTCGATCGTGCCGAGGT
LOC_Os04g53300
Os.55517.1.S1_x_at--822--7471Chr04:31532341..31532365 (25 bp)
GTGTGGCTGCGATTCGGTCACCGTC
LOC_Os04g53300
Os.55517.1.S1_x_at--1039--9652Chr04:31532373..31532397 (25 bp)
TCAGCATCGGCTACGCTAAGTGAAG
LOC_Os04g53300
Os.55517.1.S1_x_at--846--7351Chr04:31532392..31532416 (25 bp)
GTGAAGCACAACGTGAACCGTGGAC
LOC_Os04g53300
Os.55517.1.S1_x_at--106--5451Chr04:31532406..31532430 (25 bp)
GAACCGTGGACGTATATTTATCATC
LOC_Os04g53300
Os.55517.1.S1_x_at--641--2611Chr04:31532441..31532465 (25 bp)
AACCCAGATGGAGAGACGGATTTGT
LOC_Os04g53300
Target Sequence 
ACCACTCCACGTACGTCAAGTTCGACGTGTTCGTGAACGCGCCCGAGAGCGGGGACGGCGCGGCGACGTGCGCGGCGACG
TGCGCCGGCAGCGTCGCGCTGGCGCCGCACGGGATCCACCGCGAGGGGCAGCTGTCGCCGAGGAAGACGGAGGCGAGGTT
CGGCATATGCGACTTGCTGGACGACATCGGCGCCGACGGCGACAAGACGATCGTCGTGTCGATCGTGCCGAGGTGTGGCT
GCGATTCGGTCACCGTCGCCGGCGTCAGCATCGGCTACGCTAAGTGAAGCACAACGTGAACCGTGGACGTATATTTATCA
TCTATACATGTGAACCCAGATGGAGAGACGGATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55517.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis