Browse Element(s) Details


OsAffx.26591.1.S1_at

Description tigr:9632.m05173
TID=OsAffx.26591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5332011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53280Os.10703.2.S1_x_at1/114+31514970..31521059retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53290Os.55517.1.S1_x_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53290OsAffx.14394.1.S1_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53300Os.55517.1.S1_x_at11/114+31530077..31532540Common central domain of tyrosinase family protein, expressed
LOC_Os04g53310Os.23163.1.S1_at11/114+31532517..31540357Soluble starch synthase 3, chloroplast precursor, putative, expressed
LOC_Os04g53320OsAffx.26591.1.S1_at11/114+31543868..31544446hypothetical protein
LOC_Os04g53330Os.23474.1.A1_at11/114+31545070..31547791RRM-containing protein, putative, expressed
LOC_Os04g53340NANA4+31547980..31548210hypothetical protein
LOC_Os04g53350OsAffx.4163.1.S1_at11/114+31549966..31554077expressed protein
LOC_Os04g53350Os.57431.1.S1_x_at7/114+31549966..31554077expressed protein
LOC_Os04g53360Os.50566.1.S1_at11/114+31558251..31561915expressed protein
LOC_Os04g53360OsAffx.19501.1.S1_x_at2/114+31558251..31561915expressed protein
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26591.1.S1_at--4--3371Chr04:31543982..31544006 (25 bp)
CACCGCGGGCCGAGGAGCCTCGATA
LOC_Os04g53320
OsAffx.26591.1.S1_at--586--4051Chr04:31543992..31544016 (25 bp)
CGAGGAGCCTCGATACGGGCACGAA
LOC_Os04g53320
OsAffx.26591.1.S1_at--405--971Chr04:31543994..31544018 (25 bp)
AGGAGCCTCGATACGGGCACGAAGT
LOC_Os04g53320
OsAffx.26591.1.S1_at--116--9391Chr04:31544001..31544025 (25 bp)
TCGATACGGGCACGAAGTACGGCAT
LOC_Os04g53320
OsAffx.26591.1.S1_at--564--9932Chr06:4527597..4527621 (25 bp)
TACGGGCACGAAGTACGGCATCACC
NONE
OsAffx.26591.1.S1_at--888--3972Chr06:4527599..4527623 (25 bp)
CGGGCACGAAGTACGGCATCACCGC
NONE
OsAffx.26591.1.S1_at--237--7591Chr04:31544242..31544266 (25 bp)
GGGCTTGCGTGTGGCTGCCATGTGG
LOC_Os04g53320
OsAffx.26591.1.S1_at--1113--4337Chr04:31544259..31544283 (25 bp)
CCATGTGGGCCCGAGGTGTCAGTGA
LOC_Os04g53320
OsAffx.26591.1.S1_at--481--1051Chr04:31544272..31544296 (25 bp)
AGGTGTCAGTGAGAGCCGGATGCGG
LOC_Os04g53320
OsAffx.26591.1.S1_at--893--8091Chr04:31544363..31544387 (25 bp)
GGACGCGCGAGCCTTAGGAGGGAAA
LOC_Os04g53320
OsAffx.26591.1.S1_at--28--10251Chr04:31544392..31544416 (25 bp)
TTTGTGCCAAAAATGGGATCGCGCC
LOC_Os04g53320
Target Sequence 
CACCGCGGGCCGAGGAGCCTCGATACGGGCACGAAGTACGGCATCACCGCGCCGCCCTCGCCGTCCCCGGCCGCAGCAGG
AGGGGGAGACGACGAGGGCGCGGCGGGGGAAGGCGAAGGCGACGAGGGAGGGGCGGGGCGGGAGACGGCGGGGTTCCGGC
GCCGGAGCCTGGCGTCGCGGAGGCGGGCGAGGGCGCCGGGGCGGAGGAAGCGGTGGTGGTCGACGACGCCCGCGGCGGCG
GCGGCCGACGAGGAGGAGCGGGGCTTGCGTGTGGCTGCCATGTGGGCCCGAGGTGTCAGTGAGAGCCGGATGCGGGAGGC
GCGGATTGGTGGGAGGCGGAGGGAGCGGGTGGGGGTATTTGAAGGGGTTAGGGTTGGGCGGGGACGCGCGAGCCTTAGGA
GGGAAAAAGGTTTGTGCCAAAAATGGGATCGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis