Browse Element(s) Details


Os.57431.1.S1_x_at

Description gb:CR289623
DB_XREF= gi:44676189
DB_XREF=CR289623
CLONE=y639e06p5
TID=Os.57431.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31122 unknown mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g533507/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53300Os.55517.1.S1_x_at11/114+31530077..31532540Common central domain of tyrosinase family protein, expressed
LOC_Os04g53310Os.23163.1.S1_at11/114+31532517..31540357Soluble starch synthase 3, chloroplast precursor, putative, expressed
LOC_Os04g53320OsAffx.26591.1.S1_at11/114+31543868..31544446hypothetical protein
LOC_Os04g53330Os.23474.1.A1_at11/114+31545070..31547791RRM-containing protein, putative, expressed
LOC_Os04g53340NANA4+31547980..31548210hypothetical protein
LOC_Os04g53350OsAffx.4163.1.S1_at11/114+31549966..31554077expressed protein
LOC_Os04g53350Os.57431.1.S1_x_at7/114+31549966..31554077expressed protein
LOC_Os04g53360Os.50566.1.S1_at11/114+31558251..31561915expressed protein
LOC_Os04g53360OsAffx.19501.1.S1_x_at2/114+31558251..31561915expressed protein
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57431.1.S1_x_at--945--2491Chr04:31551299..31551323 (25 bp)
AACATGATTCCCTCAAGCTGCGAGA
LOC_Os04g53350
Os.57431.1.S1_x_at--276--10771Chr04:31551140..31551164 (25 bp)
TTGAGGCTTTTATTGCTGCATGCAG
LOC_Os04g53350
Os.57431.1.S1_x_at--916--3131Chr04:31551032..31551056 (25 bp)
AATTCAGATATGAGCCACCGGCACA
LOC_Os04g53350
Os.57431.1.S1_x_at--309--9231Chr04:31550991..31551015 (25 bp)
TCCATTTTTGAAGAGCTGCGTCCAA
LOC_Os04g53350
Os.57431.1.S1_x_at--764--9131Chr04:31550975..31550999 (25 bp)
TGCGTCCAAGTGAAGAGCCTGTCAT
LOC_Os04g53350
Os.57431.1.S1_x_at--284--5511Chr04:31550926..31550950 (25 bp)
GAACAACTCTGCTATGTGCGAATCA
LOC_Os04g53350
Os.57431.1.S1_x_at--26--7311NONE
GTGCGAATCAGAAATCCCAGAGGCT
NONE
Os.57431.1.S1_x_at--438--6211Chr04:31550892..31550916 (25 bp)
GAGGCTAGCCCAATGACTGATATAT
LOC_Os04g53350
Os.57431.1.S1_x_at--1117--2351NONE
AAAGCCACCAAGGTATACTCAAGTA
NONE
Os.57431.1.S1_x_at--333--7371NONE
GTGACACTCAACATTGCAGCAGCTG
NONE
Os.57431.1.S1_x_at--111--1611NONE
AGCTGGGAGACCATAAGCCCTGCAC
NONE
Target Sequence 
AACATGATTCCCTCAAGCTGCGAGAGGAGGTTGATGAGGANCGCAAGATGCTACAGATGGCTGAGGTTTGGCGTGAAGAA
CGGGTGCAGATGAAGCTTGTTGATGCAAAACTTACTCTTGATGCCAAATACACACAATTGAGCAAACTGCAACAGGNTGT
TGAGGCTTTTATTGCTGCATGCAGTTGTGCTAGAGGAGACATTATGGTTGTGGAAGAAGCAGAGAACATAATACAGGCGA
TCAAATCTGTTAGAGCACAAGATATTGAATTCAGATATGAGCCACCGGCACAATCAGAAGACATATTTTCCATTTTTGAA
GAGCTGCGTCCAAGTGAAGAGCCTGTCATAAAGGAGATTGAGCCATGCTACAAGAACAACTCTGCTATGTGCGAATCAGA
AATCCCAGAGGCTAGCCCAATGACTGATATATTCCTGGAAAAGCCACCAAGGTATACTCAAGTAAAAGCCCTCAGAATGA
GAGTGACACTCAACATTGCAGCAGCTGGGAGACCATAAGCCCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57431.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis