Browse Element(s) Details


Os.14109.1.S1_at

Description gb:AK121268.1
DB_XREF= gi:37990891
TID=Os.14109.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105G11, full insert sequence.
FL= gb:AK121268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g532408/11Autophagy-related protein 8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein
LOC_Os04g53220Os.4147.1.S1_at11/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_x_at8/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_at6/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53230Os.20702.1.S1_at11/114+31481897..31484526Aminomethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os04g53240Os.14109.1.S1_at8/114+31497308..31500105Autophagy-related protein 8 precursor, putative, expressed
LOC_Os04g53250OsAffx.14394.1.S1_at10/114+31502654..31504041hypothetical protein
LOC_Os04g53250Os.55517.1.S1_x_at1/114+31502654..31504041hypothetical protein
LOC_Os04g53260OsAffx.26590.2.S1_at10/114+31508706..31510284Common central domain of tyrosinase family protein, expressed
LOC_Os04g53270NANA4+31511700..31514653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53280Os.10703.2.S1_x_at1/114+31514970..31521059retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53290Os.55517.1.S1_x_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53290OsAffx.14394.1.S1_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0005737cellular_componentcytoplasm
GO:0005775cellular_componentvacuolar lumen
GO:0005776cellular_componentautophagic vacuole
GO:0008017molecular_functionmicrotubule binding
GO:0019776molecular_functionAPG8 conjugating enzyme activity
GO:0019779molecular_functionAPG8 activating enzyme activity
GO:0019786molecular_functionAPG8-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14109.1.S1_at--168--8831Chr04:31499882..31499906 (25 bp)
TGATTCGTGTTTTTGCTCGTGTTCT
LOC_Os04g53240
Os.14109.1.S1_at--453--8091Chr04:31499748..31499878 (25 bp)
GGACCAGCTCAGTCTCTCGAAGGAG
LOC_Os04g53240
Os.14109.1.S1_at--105--2691NONE
AAGCTGGACCACACGCTCGAGAGGA
NONE
Os.14109.1.S1_at--412--1411NONE
AGAAAAAGTACCTGGTCCCTGCTGA
NONE
Os.14109.1.S1_at--1031--5371NONE
GAAGAATACTCTTCCACCAACAGCT
NONE
Os.14109.1.S1_at--923--2471Chr04:31497585..31497607 (23 bp)
AACAGCTGCTCTGATGTCCGCAATT
LOC_Os04g53240
Os.14109.1.S1_at--744--5971Chr04:31497509..31497533 (25 bp)
GAGAACACCTTTGGGCTGCTCTAGG
LOC_Os04g53240
Os.14109.1.S1_at--764--7431Chr04:31497434..31497458 (25 bp)
GTGTATATTCTTTGCTTACCTCGTG
LOC_Os04g53240
Os.14109.1.S1_at--136--9071Chr04:31497422..31497446 (25 bp)
TGCTTACCTCGTGGCAAATCTTTAA
LOC_Os04g53240
Os.14109.1.S1_at--234--7071Chr04:31497385..31497409 (25 bp)
GTAATGCCAAGATCCTCTCAGTTGT
LOC_Os04g53240
Os.14109.1.S1_at--16--10191Chr04:31497350..31497374 (25 bp)
TATACGCTGCTTGATAATACTCCCA
LOC_Os04g53240
Target Sequence 
TGATTCGTGTTTTTGCTCGTGTTCTCCAGGACCAGCTCAGTCTCTCGAAGGAGCGCCATGGCCAAGAGCTCGTTCAAGCT
GGACCACACGCTCGAGAGGAGGCAGGCTGAGGCTAACCGTATCAGAGAAAAGTACAGTGACAGAATTCCTGTGATTGTTG
AGAAAGCTGAAAGAAGTGATATTCCTGACATCGACAAGAAAAAGTACCTGGTCCCTGCTGATCTTACCGTTGGGCAGTTT
GTCTATGTTGTTCGGAAGCGGATCAAGCTCAGTCCTGAGAAAGCAATCTTCATCTTTGTGAAGAATACTCTTCCACCAAC
AGCTGCTCTGATGTCCGCAATTTACGAGGAGAACAAGGATGAGGNATGGGTTCCTCTACATGACCTACAGTGGCGAGAAC
ACCTTTGGGCTGCTCTAGGCGCGGCAGCAATATCGCTCTCAACTCCTGTAAATAAGACTTGCCAAACAAGTGTATATTCT
TTGCTTACCTCGTGGCAAATCTTTAAACTCTAATAGTAGTAATGCCAAGATCCTCTCAGTTGTTCTGAACATATATACGC
TGCTTGATAATACTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis