Browse Element(s) Details


OsAffx.14684.1.S1_at

Description tigr:9633.m01240
TID=OsAffx.14684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1421011/11hypothetical protein
LOC_Os06g326101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14180Os.11876.1.S1_s_at11/115+7930186..7933694Auxin-responsive protein IAA9, putative, expressed
LOC_Os05g14194Os.22487.1.S1_at11/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14194OsAffx.4331.1.S1_at10/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14210OsAffx.14684.1.S1_at11/115+7947180..7947746hypothetical protein
LOC_Os05g14220OsAffx.26878.1.S1_at11/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14220Os.4820.1.S1_at1/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14230NANA5+7960254..7960508hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14684.1.S1_at--775--5771Chr05:7947624..7947648 (25 bp)
GACGATGGTGGTGGCACGACAGCTT
LOC_Os05g14210
OsAffx.14684.1.S1_at--188--5071Chr05:7947508..7947532 (25 bp)
GCACGAATCGAGAGGTTGTCAAAAC
LOC_Os05g14210
OsAffx.14684.1.S1_at--963--9372Chr03:25431093..25431117 (25 bp)
TCGAGAGGTTGTCAAAACGAGTTTT
NONE
OsAffx.14684.1.S1_at--494--2371Chr05:7947487..7947511 (25 bp)
AAACGAGTTTTGATCGACATGGAGA
LOC_Os05g14210
OsAffx.14684.1.S1_at--1109--4791Chr05:7947424..7947448 (25 bp)
GCTCGTTGGCGATCGGTGGCATCCT
LOC_Os05g14210
OsAffx.14684.1.S1_at--1124--7511Chr05:7947409..7947433 (25 bp)
GTGGCATCCTTTTTCTCGGTTGGAT
LOC_Os05g14210
OsAffx.14684.1.S1_at--80--103113Chr12:12692597..12692618 (22 bp)
TTTCTCGGTTGGATCGGCACTGGGA
NONE
OsAffx.14684.1.S1_at--333--5292Chr09:11679553..11679573 (21 bp)
GAATGGCGATGCGTCTGGGAGAGAA
NONE
OsAffx.14684.1.S1_at--284--972Chr09:3553888..3553912 (25 bp)
AGGAGCTCGGCATTTTGAGGGCGTC
NONE
OsAffx.14684.1.S1_at--1096--9512Chr05:16335247..16335271 (25 bp)
TCTCTCTGCTGGTCGGTTGGAAGAG
NONE
OsAffx.14684.1.S1_at--430--7492Chr01:14914609..14914628 (20 bp)
GTGGGCAAGCCCAAGTGGCTGCCAA
NONE
Target Sequence 
GACGATGGTGGTGGCACGACAGCTTGGCCCGGCTTGGTCCACAAAAGCGGGAACGGCGGTGCACAGAGCGCGCTCCAGAG
CTCCGGTGGGCATGGCAGCATTCCCGTCGATTGGCTGCACGAATCGAGAGGTTGTCAAAACGAGTTTTGATCGACATGGA
GAGAAGATAATAGAACGTGAGTTAGATAGGGAAGGAGATGGCTCGTTGGCGATCGGTGGCATCCTTTTTCTCGGTTGGAT
CGGCACTGGGATGGAAAGTGAAGAATGGCGATGCGTCTGGGAGAGAAGTAGAGAAGGAGCTCGGCATTTTGAGGGCGTCG
ACACGTCACTCCCATGCGTCGAGCACTGCCAACGCCCTCGATCTCTCTCTCTCTCTCTCTCTGCTGGTCGGTTGGAAGAG
ATGGACAGGGAGTGGGCAAGCCCAAGTGGCTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis