Browse Element(s) Details


OsAffx.14699.1.S1_s_at

Description tigr:9633.m01306
TID=OsAffx.14699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ring finger E3 ligase SINAT5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1486011/11Ubiquitin ligase SINAT3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14800OsAffx.4338.1.S1_at8/115+8386618..8395281Cycloartenol synthase, putative
LOC_Os05g14810NANA5+8397335..8399231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g14820OsAffx.14697.1.S1_at10/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14820Os.51403.1.S1_at1/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14830NANA5+8409835..8410271hypothetical protein
LOC_Os05g14840OsAffx.4339.1.S1_at9/115+8413389..8414614hypothetical protein
LOC_Os05g14850Os.52782.1.S1_at1/115+8417761..8418776hypothetical protein
LOC_Os05g14860OsAffx.14699.1.S1_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14860OsAffx.14699.1.S1_s_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14870OsAffx.4340.1.S1_at11/115+8426921..8427440hypothetical protein
LOC_Os05g14880Os.53594.1.S1_at11/115+8429808..8431098expressed protein
LOC_Os05g14890OsAffx.14700.1.S1_at11/115+8434877..8436271hypothetical protein
LOC_Os05g14900OsAffx.26894.1.S1_at11/115+8439795..8441746expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14699.1.S1_s_at--761--5271Chr05:8424526..8424550 (25 bp)
GAATGAAGCGAGGAACTACACCTAC
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--587--2791Chr05:8424578..8424602 (25 bp)
AAGATGGTGTGGGAAGGCACCCCTA
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--1107--5291Chr05:8424590..8424614 (25 bp)
GAAGGCACCCCTAGGAGCATCCGCG
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--26--4971Chr05:8424762..8424786 (25 bp)
GCATACCGAACCTTTGTAGCTGATG
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--401--6311Chr05:8424783..8424807 (25 bp)
GATGAGCAAAGCGTACGACAGATGA
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--1088--2571Chr05:8424808..8424832 (25 bp)
AACGATTTGTTGCTATTTGGCTGGC
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--689--211Chr05:8424822..8424846 (25 bp)
ATTTGGCTGGCTTGTTATTTTTATC
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--1051--171Chr05:8424838..8424862 (25 bp)
ATTTTTATCCATTGCCATGTCCTGT
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--411--4431Chr05:8424851..8424875 (25 bp)
GCCATGTCCTGTTTTCGATAGTCCA
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--995--6491Chr05:8424867..8424891 (25 bp)
GATAGTCCAGTGATCGTGCCAGTGC
LOC_Os05g14860
OsAffx.14699.1.S1_s_at--835--1111Chr05:8424875..8424899 (25 bp)
AGTGATCGTGCCAGTGCTGTTGTAT
LOC_Os05g14860
Target Sequence 
GAATGAAGCGAGGAACTACACCTACAGCCTAGAGGTTGGTGGTAATGGCAGGAAGATGGTGTGGGAAGGCACCCCTAGGA
GCATCCGCGACAGCCACCGGAAGGTGCGGGACAGCCATGACGGCCTCATCATCCAGAGGAACATGGCACTCTTCTTCTCC
GGCGGTGACAGGAAGGAGCTGAAGCTGAGGGTGACCGGCCGTATCTGGAAAGAACAGACGAACCCGGATGGGGCCTGCAT
ACCGAACCTTTGTAGCTGATGAGCAAAGCGTACGACAGATGAAACGATTTGTTGCTATTTGGCTGGCTTGTTATTTTTAT
CCATTGCCATGTCCTGTTTTCGATAGTCCAGTGATCGTGCCAGTGCTGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14699.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis